<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Hi Kumar,<br>
<br>
Are you sure your <span style="font-family:"Courier
New"">Independent variable are in the</span> rigth format?
<br>
e.g: <br>
- have you both presences and absences in your
IndependentResponse var? , <br>
- did you removed all NAs from your IndependentExplanatory?<br>
<br>
You can easily check it printing your variables summaries (i.e
summary(Expl.VarTest) )<br>
<br>
Best,<br>
<br>
Damien.<br>
<br>
On 16/07/2012 03:05, Kumar Mainali wrote:<br>
</div>
<blockquote
cite="mid:CABK368jNoa0JYYDvw0robU565f7YJWGUVLhRfL4XjXH9KU6ntQ@mail.gmail.com"
type="cite">
<div><font face="tahoma, sans-serif">Hello BIOMODellers,</font></div>
<div><font face="tahoma, sans-serif"><br>
</font></div>
<div><font face="tahoma, sans-serif">I am working on BIOMOD
v 1.1-7.02 in R 2.14.1 and am trying to run four models with
independent test data. After running the first model for a
while, it gives me the following error message and it stops: "</font><span
style="font-family:'Courier New'">number of columns of result
is not a multiple of vector length (arg 1)</span><span
style="font-family:tahoma,sans-serif">". Just to see what
would happen, I used the same dataset used in building model
to test it. This time, there was no error message. </span></div>
<div><span style="font-family:tahoma,sans-serif"><br>
</span></div>
<div><span style="font-family:tahoma,sans-serif">Thanks in
advance.</span></div>
<div><span style="font-family:tahoma,sans-serif">- Kumar</span></div>
<div><font face="tahoma, sans-serif"><br>
</font></div>
<div>
<p class="MsoNormal"><span style="font-family:"Courier
New"">Initial.State(Response
= Resp.Var, <a moz-do-not-send="true" href="http://sp.name"
target="_blank">sp.name</a> = "Something", Explanatory =
Expl.Var,</span></p>
<p class="MsoNormal"><span style="font-family:"Courier
New"">IndependentResponse
= Resp.VarTest, IndependentExplanatory = Expl.VarTest)</span></p>
</div>
<div><font face="tahoma, sans-serif"><br>
</font></div>
<div><span style="font-family:'Courier New'">> Models(GLM = T,
TypeGLM =
"poly", Test = "AIC",</span></div>
<div>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ GBM = T,
No.trees = 5000,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ GAM = T,
Spline = 3, CTA = F, CV.tree = 50,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ ANN = F,
CV.ann = 2,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ SRE = F,
quant=0.025,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ FDA = F,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ MARS = F,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ RF = T,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ NbRunEval = 1,
DataSplit = 100,
Yweights=NULL,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ Roc = T,
Optimized.Threshold.Roc = T, Kappa
= T, TSS=T,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+
KeepPredIndependent = T, VarImport=T,</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">+ NbRepPA=1,
strategy="random",
coor=LatLong, nb.absences=2329)</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New""> </span><span
style="font-family:'Courier New'"> </span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New""> </span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">#####
pseudo-absence run 1 #####</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">Model=GAM spline
</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">
3 Degrees of smoothing </span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">Evaluating
Predictor Contributions in GAM ... </span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">Error in
KappaStat(Misc) : subscript out of
bounds</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">In addition:
Warning message:</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">In rbind(Misc,
a) :</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">
number of columns of result is not a multiple of vector
length (arg 1)</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New""><br>
</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">>
Evaluation.results.Kappa</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">$Something_PA1</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">
Cross.validation indepdt.data total.score Cutoff Sensitivity
Specificity</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">GAM
NA NA NA
NA NA NA</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">GBM
NA NA NA
NA NA NA</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">GLM
NA NA NA
NA NA NA</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">RF
NA NA NA
NA NA NA</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New""> </span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">>
Evaluation.results.Roc</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">$Something_PA1</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">
Cross.validation indepdt.data total.score Cutoff Sensitivity
Specificity</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">GAM
NaN <NA> 0.817 493.52 74.168
74.109</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">GBM
<NA> <NA> <NA>
<NA> <NA> <NA></span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">GLM
<NA> <NA> <NA>
<NA> <NA> <NA></span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt"><span
style="font-family:"Courier New"">RF
<NA> <NA> <NA>
<NA> <NA> <NA></span></p>
</div>
<div><font face="tahoma, sans-serif"><br>
</font></div>
<div>-- </div>
<font color="#666666" face="tahoma, sans-serif">Section of
Integrative Biology<br>
University of Texas at Austin<br>
Austin, Texas 78712, USA</font><br>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Biomod-commits mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a>
<a class="moz-txt-link-freetext" href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits</a></pre>
</blockquote>
<br>
<br>
</body>
</html>