<div><font face="tahoma, sans-serif">Hello BIOMODellers,</font></div><div><font face="tahoma, sans-serif"><br></font></div><div><font face="tahoma, sans-serif">I am working on BIOMOD v 1.1-7.02 in R 2.14.1 and am trying to run four models with independent test data. After running the first model for a while, it gives me the following error message and it stops: "</font><span style="font-family:'Courier New'">number of columns of result is not a multiple of vector length (arg 1)</span><span style="font-family:tahoma,sans-serif">". Just to see what would happen, I used the same dataset used in building model to test it. This time, there was no error message. </span></div>
<div><span style="font-family:tahoma,sans-serif"><br></span></div><div><span style="font-family:tahoma,sans-serif">Thanks in advance.</span></div><div><span style="font-family:tahoma,sans-serif">- Kumar</span></div>
<div><font face="tahoma, sans-serif"><br></font></div><div><p class="MsoNormal"><span style="font-family:"Courier New"">Initial.State(Response
= Resp.Var, <a href="http://sp.name" target="_blank">sp.name</a> = "Something", Explanatory = Expl.Var,</span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">IndependentResponse
= Resp.VarTest, IndependentExplanatory = Expl.VarTest)</span></p></div><div><font face="tahoma, sans-serif"><br></font></div><div><span style="font-family:'Courier New'">> Models(GLM = T, TypeGLM =
"poly", Test = "AIC",</span></div><div>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ GBM = T, No.trees = 5000,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ GAM = T, Spline = 3, CTA = F, CV.tree = 50,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ ANN = F, CV.ann = 2,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ SRE = F, quant=0.025,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ FDA = F,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ MARS = F,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ RF = T,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ NbRunEval = 1, DataSplit = 100,
Yweights=NULL,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ Roc = T, Optimized.Threshold.Roc = T, Kappa
= T, TSS=T,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ KeepPredIndependent = T, VarImport=T,</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">+ NbRepPA=1, strategy="random",
coor=LatLong, nb.absences=2329)</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New""> </span><span style="font-family:'Courier New'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New""> </span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">##### pseudo-absence run 1 #####</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">Model=GAM spline </span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">
3 Degrees of smoothing </span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">Evaluating Predictor Contributions in GAM ... </span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">Error in KappaStat(Misc) : subscript out of
bounds</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">In addition: Warning message:</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">In rbind(Misc, a) :</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">
number of columns of result is not a multiple of vector length (arg 1)</span></p><p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New""><br></span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">> Evaluation.results.Kappa</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">$Something_PA1</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">
Cross.validation indepdt.data total.score Cutoff Sensitivity Specificity</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">GAM NA NA NA
NA NA NA</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">GBM NA NA NA
NA NA NA</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">GLM NA NA NA
NA NA NA</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">RF NA NA NA
NA NA NA</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New""> </span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">> Evaluation.results.Roc</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">$Something_PA1</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">
Cross.validation indepdt.data total.score Cutoff Sensitivity Specificity</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">GAM NaN <NA> 0.817 493.52 74.168
74.109</span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">GBM <NA> <NA> <NA> <NA> <NA> <NA></span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">GLM <NA> <NA> <NA> <NA> <NA> <NA></span></p>
<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt"><span style="font-family:"Courier New"">RF <NA> <NA> <NA> <NA> <NA> <NA></span></p>
</div><div><font face="tahoma, sans-serif"><br></font></div><div>-- </div><font color="#666666" face="tahoma, sans-serif">Section of Integrative Biology<br>
University of Texas at Austin<br>Austin, Texas 78712, USA</font><br>