<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Hi Ashley,</div><div><br></div><div>I am not quite sure what you really would like to do. </div><div>Do you want to estimate the consensus AUC for the calibrated models? for the final models? for the future? </div><div><br></div><div>In the meantime, given the line of code you wrote for the Ensemble.Forecasting, you should have a printed message with the consensus AUC for the calibrated and final models. </div><div><br></div><div>Something like this the one pasted below. The AUC are in $Sp164$test.results </div><div><br></div><div><div>$Sp164</div><div>$Sp164$weights</div><div> ANN CTA GAM GBM GLM MARS FDA RF SRE</div><div>PA1 0 0.3846 0 0 0 0 0 0.6154 0</div><div>PA1_rep1 0 0.3846 0 0 0 0 0 0.6154 0</div><div><br></div><div>$Sp164$PCA.median</div><div> model.selected</div><div>PA1 "RF" </div><div>PA1_rep1 "CTA" </div><div><br></div><div>$Sp164$thresholds</div><div> PA1 PA1_rep1</div><div>prob.mean 743.5000 631.3875</div><div>prob.mean.weighted 720.0769 568.0673</div><div>median 743.5000 631.3875</div><div>Roc.mean 500.0000 500.0000</div><div>Kappa.mean 500.0000 500.0000</div><div>TSS.mean 500.0000 500.0000</div><div><br></div><div>$Sp164$test.results</div><div> PA1 PA1_rep1</div><div>prob.mean 0.9994010 0.9948069</div><div>prob.mean.weighted 0.9997921 0.9968292</div><div>median 0.9994010 0.9948069</div><div>Roc.mean 0.9929901 0.9912946</div><div>Kappa.mean 0.9993688 0.9921139</div><div>TSS.mean 0.9995842 0.9903020</div></div><div><br></div><div><br></div><div><br></div><div>Hope it helps,</div><div><br></div><div>Cheers,</div><div><br></div><div>Wilfried</div><div><br></div><div><br></div><div><br></div><div><br></div><br><div><div>Le 3 avr. 2012 à 21:49, Ashley Brooks a écrit :</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi all!<div><br></div><div>I would like to report the overall AUC value for my ensemble prediction and my question is: where is the consensus AUC output or do I need to calculate this myself? If I need to calculate manually does the fact that my decay was set to proportional? Here are my commands thus far:</div>
<div><br></div><div><div style="">> Models(GLM=T, TypeGLM="poly", Test="AIC", GBM=T, No.trees=2000, GAM=T, Spline=3, CTA=T, CV.tree=50, ANN=T, CV.ann=2, SRE=T,quant=0.05, FDA=T, MARS=T, RF=T, NbRunEval=3, DataSplit=70, Yweights=NULL, Roc=T, Optimized.Threshold.Roc=T, Kappa=T, TSS=T, KeepPredIndependent=T, VarImport=5, NbRepPA=2, strategy="circles", coor=Coor, distance=2, nb.absences=1000)</div>
<div style=""><br></div><div style="">> Projection(Proj=cccm80a2a[,3:12], Proj.name='cccm80a2a', GLM=T, GBM=T, GAM=T, CTA=T, ANN=T, SRE=T, quant=0.05, FDA=T, MARS=T, RF=T, BinRoc=T, BinKappa=F, BinTSS=F, FiltRoc=T, FiltKappa=F, FiltTSS=F, repetition.models=T)</div>
</div><div style=""><br></div><div><span style="">> Ensemble.Forecasting(Proj.</span><span style="">name="cccm80a2a", weight.method='Roc', PCA.media=F, binary=T, bin.method='Roc', Test=T, decay="proportional", repetition.models=T, final.model.out=TRUE)</span></div>
<div><span style=""><br></span></div><div><span style="">Thanks for your help!</span></div><div><span style="">Ashley</span></div>
_______________________________________________<br>Biomod-commits mailing list<br><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits</blockquote></div><br><div apple-content-edited="true">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>--------------------------</div><div>Dr. Wilfried Thuiller</div><div>Laboratoire d'Ecologie Alpine, UMR CNRS 5553</div><div>Université Joseph Fourier</div><div>BP53, 38041 Grenoble cedex 9, France</div><div>tel: +33 (0)4 76 51 44 97</div><div>fax: +33 (0)4 76 51 42 79</div><div><br></div><div>Email: <a href="mailto:wilfried.thuiller@ujf-grenoble.fr">wilfried.thuiller@ujf-grenoble.fr</a><br>Personal website: <a href="http://www.will.chez-alice.fr/">http://www.will.chez-alice.fr</a><br>Team website: <a href="http://www-leca.ujf-grenoble.fr/equipes/emabio.htm">http://www-leca.ujf-grenoble.fr/equipes/emabio.htm</a><br><br>ERC Starting Grant TEEMBIO project: <a href="http://www.will.chez-alice.fr/Research.html">http://www.will.chez-alice.fr/Research.html</a><br>FP6 European EcoChange project: <a href="http://www.ecochange-project.eu/">http://www.ecochange-project.eu</a></div><div><br></div></span></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
</div>
<br></body></html>