<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Dear Andreas,</div><div><br></div><div>If you strictly follow the tutorials, it should work. </div><div><br></div><div>Perhaps you could copy paste the Initial.State call you made</div><div><br></div><div>+</div><div><br></div><div>The first ten lines of your observed data (head(MyDate). </div><div><br></div><div>+ </div><div><br></div><div>summary( MyData)</div><div><br></div><div>I doubt there are in the good format.</div><div><br></div><div>If you also fear this is because of the categorical variable, try without it. </div><div><br></div><div><blockquote type="cite"><div><div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-family: arial, helvetica, sans-serif; font-size: 10pt; position: static; z-index: auto; "><div><div style="font-family: 'Times New Roman'; font-size: medium; "><span style="font-family: arial, helvetica, sans-serif; font-size: 13px; "><div class="MsoNormal"><span lang="EN-US">First of all, does someone have to go through the whole procedure
of typing the code above for each model and for each variable, and to use the predict() function each time? According to the tutorial “once the models are trained (i.e. calibrated), a standard prediction is made. Then, one of the variables is randomized and a new prediction is made.” I thought that BIOMOD was following this procedure automatically. If yes, how? If not, </span><span lang="EN-US">how can I load CTA, ANN (and all the rest of the models in general) the same way glm is loaded in the code above (i.e. glm</span><span lang="ES">(Sp281 ~ Var1 + Var2 + Var3 + Var4 + Var5 + Var6 + Var7, data=Sp.Env))?</span></div></span></div></div></div></div></blockquote><div><br></div><div>Obviously not, or I will not have spent ten years coding BIOMOD… </div><div><br></div><div>Best</div><div><br></div><div>Wilfried</div><div><br></div><div><br></div><div><br></div><div><br></div><br><blockquote type="cite"><div><div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-family: arial, helvetica, sans-serif; font-size: 10pt; position: static; z-index: auto; "><div><div style="font-family: 'Times New Roman'; font-size: medium; "><span style="font-family: arial, helvetica, sans-serif; font-size: 13px; "><div class="MsoNormal"><span lang="EN-US"><o:p></o:p></span></div><div class="MsoNormal"><span lang="ES"><br></span></div></span></div><div style="font-family: 'Times New Roman'; font-size: medium; "><span style="font-size: small; font-family: arial, helvetica, sans-serif; ">Cheers,</span></div><div style="font-family: 'Times New Roman'; font-size: medium;
"><span style="font-size: small; font-family: arial, helvetica, sans-serif; "><br></span></div><div style="font-family: 'Times New Roman'; font-size: medium; "><span style="font-family: arial, helvetica, sans-serif; font-size: 13px; ">Andreas</span></div></div></div></div>_______________________________________________<br>Biomod-commits mailing list<br><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits</blockquote></div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>--------------------------</div><div>Dr. Wilfried Thuiller</div><div>Laboratoire d'Ecologie Alpine, UMR CNRS 5553</div><div>Université Joseph Fourier</div><div>BP53, 38041 Grenoble cedex 9, France</div><div>tel: +33 (0)4 76 51 44 97</div><div>fax: +33 (0)4 76 51 42 79</div><div><br></div><div>Email: <a href="mailto:wilfried.thuiller@ujf-grenoble.fr">wilfried.thuiller@ujf-grenoble.fr</a><br>Personal website: <a href="http://www.will.chez-alice.fr/">http://www.will.chez-alice.fr</a><br>Team website: <a href="http://www-leca.ujf-grenoble.fr/equipes/emabio.htm">http://www-leca.ujf-grenoble.fr/equipes/emabio.htm</a><br><br>ERC Starting Grant TEEMBIO project: <a href="http://www.will.chez-alice.fr/Research.html">http://www.will.chez-alice.fr/Research.html</a><br>FP6 European EcoChange project: <a href="http://www.ecochange-project.eu/">http://www.ecochange-project.eu</a></div><div><br></div></span></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
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