<span style>confirm 18ee744ad3977b59039ac17e53e4bc</span><span style>7c154780d9</span> <br><div class="gmail_quote"><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>Hi!</div><div>I having some issues while trying to run the BioMod script in R. I keep getting this error message while I run the different models provided my BioMod with my data. What does it mean?</div><div><br></div>
<div><pre><span><span lang="EN-US" style="font-family:"Lucida Console";color:blue">> </span></span><span><span lang="EN-US" style="font-family:"Lucida Console";color:blue">Models(GLM=T,TypeGLM="poly",Test="AIC",GBM=T,No.trees=2000,GAM=T,Spline=3,CTA=T,CV.tree=50,ANN=T,CV.ann=2,SRE=T,quant=0.025,FDA=T,MARS=T,RF=T,NbRunEval=3,DataSplit=70,Yweights=NULL,Roc=T,Optimized.Threshold.Roc=T,Kappa=T,TSS=T,KeepPredIndependent=T,VarImport=5,NbRepPA=2,strategy="sre",coor=My.Data[,2:3],distance=2,nb.absences=100)</span></span><span lang="EN-US" style="font-family:'Lucida Console'"></span></pre>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">-----------------------------------
</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">Modelling
summary </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">-----------------------------------
</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">Number of
species modelled : 1</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">peromyscus</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">numerical
variables : photo01,
photo02, photo03, photo04, photo05, photo09, photo10, photo11, photo12,
allqcland, recancover, tminavg01, tminavg02, tminavg03, tminavg04, tminavg05,
tminavg06, tminavg07, tminavg08, tminavg09, tminavg10, tminavg11, tminavg12,
tmaxavg01, tmaxavg02, tmaxavg03, tmaxavg04, tmaxavg05, tmaxavg06, tmaxavg07,
tmaxavg08, tmaxavg09, tmaxavg10, tmaxavg11, tmaxavg12, trngavg, precavg01,
precavg02, precavg03, precavg04, precavg05, precavg06, precavg07, precavg08,
precavg09, precavg10, precavg11, precavg12, sdmavg01, sdmavg02, sdmavg03,
sdmavg04, sdmavg05, sdmavg06, sdmavg07, sdmavg08, sdmavg09, sdmavg10, sdmavg11,
sdmavg12, wlenavg, wpravg, wtmnavg, wtmxavg</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">number of
evaluation repetitions : 3</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">number of
pseudo-absences runs : 2</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">models
selected : ANN, CTA,
GAM, GBM, GLM, MARS, FDA, RF, SRE</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">total number
of model runs : 72</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">-----------------------------------
</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">##### peromyscus #####</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">#####
pseudo-absence run 1 #####</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">Model=Artificial
Neural Network </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> 2
Fold Cross Validation + 3 Repetitions </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">Calibration
and evaluation phase: Nb of cross-validations:
3 </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">Error in
parse(text = paste("Target[Samp$calibration]",
paste(.scopeExpSyst(Input[1:10, : </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> <text>:2:0: unexpected end of input</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'">1: 12 +
tmaxavg01 + tmaxavg02 + tmaxavg03 + tmaxavg04 + tmaxavg05 + tmaxavg06 +
tmaxavg07 + tmaxavg08 + tmaxavg09 + tmaxavg10 + tmaxavg11 + tmaxavg12 + trngavg
+ precavg01 + precavg02 + precavg03</span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US" style="font-size:10pt;font-family:'Lucida Console'"> ^</span></p></div><div><br></div><p class="MsoNormal" style="margin-bottom:0.0001pt"><font face="'Lucida Console'">Thank you,</font></p>
<span style="font-family:Tahoma;font-size:13px"><div><font face="Tahoma"><u>____________________________________</u></font></div><span class="HOEnZb"><font color="#888888"><div><font face="Tahoma">Emilie Roy-Dufresne</font></div>
<div><font face="tahoma">M. Sc. Candidate Geography Department - McGill - Biogeography studies</font></div>
<div><font face="tahoma">Guide en tourisme d'aventure</font></div></font></span></span><br>
</blockquote></div><br><br>