<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Hi there all,</div><div><br></div><div>You are right Robin. This is not retrievable. In the first version of BIOMOD, we did extract the training and testing data and associated predictions. However, given the number of outputs BIOMOD can now create (especially if you make projections) we then decided to remove this information for memory and space limitations. </div><div><br></div><div>We now only use the testing data for the estimating Kappa/TSS/AUC and then remove the data. </div><div><br></div><div>Cheers,</div><div>Wilfried</div><div><br></div><div><br></div><div><br></div><br><div><div>Le 23 sept. 2011 à 00:32, Robin Engler a écrit :</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi Brenna,<br><br>As of the current version of BIOMOD and as far as I know (Wilfried,<br>correct me if I'm wrong), you cannot retrieve this information from<br>the BIOMOD outputs.<br>Best,<br>Robin<br><br><br>On Thu, Sep 22, 2011 at 7:24 PM, Brenna Forester<br><<a href="mailto:brenna.forester@duke.edu">brenna.forester@duke.edu</a>> wrote:<br><blockquote type="cite">Hello everyone,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Here is my model call:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Models(GLM = T, TypeGLM = "quad", Test = "AIC", GBM = T, No.trees = 5000,<br></blockquote><blockquote type="cite">GAM = T, CTA = T, CV.tree = 50, ANN = T, CV.ann = 5, SRE = F, FDA = T, MARS<br></blockquote><blockquote type="cite">= T, RF = T, NbRunEval = 10, DataSplit = 70, Yweights=NULL, NbRepPA=1,<br></blockquote><blockquote type="cite">strategy="random", nb.absences=6504, Roc=T, Optimized.Threshold.Roc=T,<br></blockquote><blockquote type="cite">Kappa=T, TSS=T, KeepPredIndependent = F, VarImport=5)<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">I would like to know (1) which presence points are withheld for testing in<br></blockquote><blockquote type="cite">each of the 10 reps, and (2) what the predictions are for those testing<br></blockquote><blockquote type="cite">points for each rep and each model.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Where can I find this information in the BIOMOD output?<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Thanks!<br></blockquote><blockquote type="cite">Brenna<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">Biomod-commits mailing list<br></blockquote><blockquote type="cite"><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br></blockquote><blockquote type="cite"><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits</a><br></blockquote><blockquote type="cite"><br></blockquote>_______________________________________________<br>Biomod-commits mailing list<br><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits<br></div></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>--------------------------</div><div>Dr. Wilfried Thuiller</div><div>Laboratoire d'Ecologie Alpine, UMR CNRS 5553</div><div>Université Joseph Fourier</div><div>BP53, 38041 Grenoble cedex 9, France</div><div>tel: +33 (0)4 76 51 44 97</div><div>fax: +33 (0)4 76 51 42 79</div><div><br></div><div>Email: <a href="mailto:wilfried.thuiller@ujf-grenoble.fr">wilfried.thuiller@ujf-grenoble.fr</a><br>Personal website: <a href="http://www.will.chez-alice.fr/">http://www.will.chez-alice.fr</a><br>Team website: <a href="http://www-leca.ujf-grenoble.fr/equipes/emabio.htm">http://www-leca.ujf-grenoble.fr/equipes/emabio.htm</a><br><br>FP6 European MACIS project: <a href="http://www.macis-project.net/">http://www.macis-project.net</a><br>FP6 European EcoChange project: <a href="http://www.ecochange-project.eu/">http://www.ecochange-project.eu</a></div><div><br></div></span></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
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