<html><head><base href="x-msg://1264/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Dear Brenna,</div><div><br></div><div>Please take look at the manual, page 29. </div><div><br></div><div><span class="Apple-style-span" style="font-family: Times; "><pre>library(BIOMOD)</pre><pre>Biomod.Manual("Biomod_Practical_Building_Models")</pre></span><div><br></div></div><div>Wilfried</div><div><br></div><div><br></div><br><div><div>Le 13 mai 2011 à 23:58, Brenna Forester a écrit :</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div ocsi="0" fpstyle="1"><div style="direction: ltr; font-family: Helvetica; color: rgb(0, 0, 0); font-size: 10pt; ">Hi everyone,<br><br>I would like to see which pseudoabsences BIOMOD pulled for each PA run. I've already run<span class="Apple-converted-space"> </span><span style="font-family: 'Courier New'; ">Models()</span><span class="Apple-converted-space"> </span>as so:<br><br><font size="2"><span style="font-family: 'Courier New'; ">Initial.State(Response=Sp.Env[,c(1)], Explanatory=Sp.Env[,4:10],<br></span></font> <span class="Apple-converted-space"> </span><font size="2"><span style="font-family: 'Courier New'; ">IndependentResponse=NULL, IndependentExplanatory=NULL, sp.name="Rhodiola")</span><br style="font-family: 'Courier New'; "><br style="font-family: 'Courier New'; "><span style="font-family: 'Courier New'; ">Models(GLM = T, TypeGLM = "quad", Test = "AIC", GBM = T, No.trees = 5000, GAM = T,<br></span></font> <span class="Apple-converted-space"> </span><font size="2"><span style="font-family: 'Courier New'; ">CTA = T,<span class="Apple-converted-space"> </span></span><span style="font-family: 'Courier New'; ">CV.tree = 50, ANN = T, CV.ann = 5, SRE = F, FDA = T, MARS = T, RF = T,<br></span></font> <span class="Apple-converted-space"> </span><font size="2"><span style="font-family: 'Courier New'; ">NbRunEval = 5, DataSplit = 70, Yweights=NULL,<span class="Apple-converted-space"> </span></span><span style="font-family: 'Courier New'; ">NbRepPA=5, strategy="random",<br></span></font> <span class="Apple-converted-space"> </span><font size="2"><span style="font-family: 'Courier New'; ">nb.absences=3000,<span class="Apple-converted-space"> </span></span><span style="font-family: 'Courier New'; ">Roc=T, Optimized.Threshold.Roc=T, Kappa=T, TSS=T,<span class="Apple-converted-space"> </span><br></span></font> <span class="Apple-converted-space"> </span><font size="2"><span style="font-family: 'Courier New'; ">KeepPredIndependent = F, VarImport=5)</span></font><br><br><br>Can I extract the PA pulls (which grid cells it used) for each of the 5 PA runs?<br><br>Thank you!<br>Brenna<br></div>_______________________________________________<br>Biomod-commits mailing list<br><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits</a><br></div></span></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>--------------------------</div><div>Dr. Wilfried Thuiller</div><div>Laboratoire d'Ecologie Alpine, UMR CNRS 5553</div><div>Université Joseph Fourier</div><div>BP53, 38041 Grenoble cedex 9, France</div><div>tel: +33 (0)4 76 51 44 97</div><div>fax: +33 (0)4 76 51 42 79</div><div><br></div><div>Email: <a href="mailto:wilfried.thuiller@ujf-grenoble.fr">wilfried.thuiller@ujf-grenoble.fr</a><br>Personal website: <a href="http://www.will.chez-alice.fr/">http://www.will.chez-alice.fr</a><br>Team website: <a href="http://www-leca.ujf-grenoble.fr/equipes/emabio.htm">http://www-leca.ujf-grenoble.fr/equipes/emabio.htm</a><br><br>FP6 European MACIS project: <a href="http://www.macis-project.net/">http://www.macis-project.net</a><br>FP6 European EcoChange project: <a href="http://www.ecochange-project.eu/">http://www.ecochange-project.eu</a></div><div><br></div></span></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
</div>
<br></body></html>