<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Dear Ashley,</div><div><br></div><div>In the help file you will see that we have changed the call for the SRE models. </div><div>?Models</div><div>I am sorry if we have let the old version in the manual or elsewhere. We are updating the manual at the moment.</div><div>Biomod.Manual()</div><div><br></div><div>That should work: </div><div><br></div><div>I replaced the Perc025 and Perc05 by quant=0.05. This is more flexible as you can select the percentile you want.</div><div>MDA is not longer in BIOMOD and has been replaced by FDA</div><div><br></div><div>Models(GLM=T, TypeGLM="poly", Test="AIC", GBM=T, No.trees=2000, GAM=T, Spline=3, CTA=T, CV.tree=50, ANN=T, CV.ann=2, SRE=T,quant=0.05, FDA=T, MARS=T, RF=T, NbRunEval=3, DataSplit=70, Yweights=NULL, Roc=T, Optimized.Threshold.Roc=T, Kappa=T, TSS=T, KeepPredIndependent=T, VarImport=5, NbRepPA=2, strategy="circles", coor=Coors, distance=2, nb.absences=1000)</div><div><br></div><div>Just a tip: when you have "unused arguments" in an error message, it generally means you have specified some arguments which does not exist in the function (in your case it was Perc025, Perc05 and MDA). Check the function and the help file and try to see where are these arguments you would like to add which do not exist. This is true for all functions in R. </div><div><br></div><div>> Models</div><div>> ?Models</div><div><br></div><div><br></div><div>Hope it helps,</div><div>Wilfried</div><div><br></div><div><br></div><div><br></div><br><div><div>Le 14 sept. 2010 à 19:08, Ashley Brooks a écrit :</div><br class="Apple-interchange-newline"><blockquote type="cite">Hello,<br><br>I am using the updated versions of both r and biomod. I am trying to run the models for my data. I typed in:<br><br> Models(GLM=T, TypeGLM="poly", Test="AIC", GBM=T, No.trees=2000, GAM=T, Spline=3, CTA=T, CV.tree=50, ANN=T, CV.ann=2, SRE=T, Perc025=F, Perc05=T, MDA=T, MARS=T, RF=T, NbRunEval=3, DataSplit=70, Yweights=NULL, Roc=T, Optimized.Threshold.Roc=T, Kappa=T, TSS=T, KeepPredIndependent=T, VarImport=5, NbRepPA=2, strategy="circles", coor=Coors, distance=2, nb.absences=1000)<br>
<br>And then recieved the following Error:<br><br>Error in Models(GLM = T, TypeGLM = "poly", Test = "AIC", GBM = T, No.trees = 2000, : <br> unused argument(s) (Perc025 = F, Perc05 = T, MDA = T)<br><br>
I am not sure what is wrong. Any help would be much appreciated.<br><br>Ashley<br>
_______________________________________________<br>Biomod-commits mailing list<br><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits<br></blockquote></div><br><div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>--------------------------</div><div>Dr. Wilfried Thuiller</div><div>Laboratoire d'Ecologie Alpine, UMR CNRS 5553</div><div>Université Joseph Fourier</div><div>BP53, 38041 Grenoble cedex 9, France</div><div>tel: +33 (0)4 76 51 44 97</div><div>fax: +33 (0)4 76 51 42 79</div><div><br></div><div>Email: <a href="mailto:wilfried.thuiller@ujf-grenoble.fr">wilfried.thuiller@ujf-grenoble.fr</a><br>Home page: <a href="http://www.will.chez-alice.fr/">http://www.will.chez-alice.fr</a><br>Website: <a href="http://www-leca.ujf-grenoble.fr/equipes/tde.htm">http://www-leca.ujf-grenoble.fr/equipes/tde.htm</a><br><br>FP6 European MACIS project: <a href="http://www.macis-project.net/">http://www.macis-project.net</a><br>FP6 European EcoChange project: <a href="http://www.ecochange-project.eu/">http://www.ecochange-project.eu</a></div><div><br></div></span></div></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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