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<font size="2"><font face="Arial, Helvetica, sans-serif">Ok, <br>
<br>
My mistake, I just realised I changed the storing procedure of the output and didn't<br>
mention it in the Manual nor did something convenient with the help file. As it is now,<br>
the naming argument is useless as no object is produced, the output is returned only.<br>
<br>
I don't know why I did this (!)<br>
For your trouble and to solve your problem, you simply need to assign the output <br>
that is returned by the function (it is printed in the R console otherwise) like this<br>
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<div class="MsoListParagraph" style="margin-bottom: 0.0001pt; text-indent: -0.25in; line-height: 200%;"><font size="2"><font face="Arial, Helvetica, sans-serif"> <font color="mediumblue"> Bastatus.sre <- </font></font></font><font style="font-size: 12pt;" size="3" color="mediumblue"><span style="font-size: 12pt; line-height: 200%;"><span style=""><span style=""></span></span></span></font><font style="font-size: 12pt;" size="3" color="mediumblue"><span style="font-size: 12pt; line-height: 200%;">pseudo.abs(coor=biomx[,2:3],
status=biomx[,12], strategy=”sre”, <font face="Arial, Helvetica, sans-serif">...</font>)</span></font><font style="font-size: 12pt;" size="3" color="mediumblue"><span style="font-size: 12pt; line-height: 200%;"></span></font></div>
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<div> <font size="2"><font face="Arial, Helvetica, sans-serif"><br>
which is easy to use in a loop by the way (maybe why I did this, not sure) by not assigniing<br>
the returned value (a vector) to an object but to a column of a matrix :<br>
<br>
<font color="mediumblue">mat <- matrix(NA, nc=50)<br>
for(i in 1:50)<br>
mat[ ,i ] <- </font></font></font><font size="2" color="mediumblue"><font face="Arial, Helvetica, sans-serif"> </font></font><font style="font-size: 12pt;" size="3" color="mediumblue"><span style="font-size: 12pt; line-height: 200%;"><span style=""><span style=""></span></span></span></font><font style="font-size: 12pt;" size="3" color="mediumblue"><span style="font-size: 12pt; line-height: 200%;">pseudo.abs(coor=biomx[,2:3],
status=biomx[<font face="Arial, Helvetica, sans-serif"> </font>,<font face="Arial, Helvetica, sans-serif">i </font>], strategy=”sre”, <font face="Arial, Helvetica, sans-serif">...</font>)</span></font><font color="mediumblue"><br>
</font><font size="2"><font face="Arial, Helvetica, sans-serif"><br>
I'll keep you informed soon about the fixing of the function, I definitely have to change this.<br>
Many thanks Aaron for mentioning !<br>
<br>
Bruno<br>
<br>
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<div style="clear: both;">-------<br>
Bruno Lafourcade<br>
Statistical tools engineer<br>
<br>
Laboratoire d'Ecologie Alpine, bureau 308<br>
CNRS - UMR 5553, 2233 rue de la piscine<br>
38400 Saint Martin d'Hères<br>
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<div style="font-family: arial,helvetica; font-size: 10pt; color: black;">-----E-mail d'origine-----<br>
De : Aaron Bueno-Cabrera <aaronbueno@hotmail.com><br>
A : Bruno Lafourcade <brunolafourcade@aol.com><br>
Envoyé le : Jeudi, 9 Septembre 2010 19:45<br>
Sujet : species.name function<br>
<br>
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<font style="font-size: 12pt;" size="3">Dear Bruno,</font><font style="font-size: 12pt;" size="3"><br>
</font><font style="font-size: 12pt;" size="3">this is the line</font><font style="font-size: 12pt;" size="3"> that I am using<br>
<br>
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</div>
<div class="MsoListParagraph" style="margin-bottom: 0.0001pt; text-indent: -0.25in; line-height: 200%;"><font style="font-size: 12pt;" size="3"><span style="font-size: 12pt; line-height: 200%;"><span style=""><span style=""></span></span></span></font><font style="font-size: 12pt;" size="3"><span style="font-size: 12pt; line-height: 200%;">pseudo.abs(coor=biomx[,2:3],
status=biomx[,12], strategy=”sre”, env=biomx[,4:11], add.pres=T, nb.points=NULL,
species.name=’Bastutus’)</span></font><font style="font-size: 12pt;" size="3"><span style="font-size: 12pt; line-height: 200%;"></span></font></div>
<div class="MsoListParagraph" style="margin: 0in 0in 0.0001pt 0.75in; text-indent: -0.75in; line-height: 200%;"><font style="font-size: 12pt;" size="3"><span style="font-size: 12pt; line-height: 200%;"></span></font></div>
<font style="font-size: 12pt;" size="3"><br>
</font><font style="font-size: 12pt;" size="3">So, I expect a 'Bastutus.sre'</font><font style="font-size: 12pt;" size="3"> object with the new pseudoabsences generated, but i can not find </font><font style="font-size: 12pt;" size="3">it!</font><font style="font-size: 12pt;" size="3"><br>
</font><font style="font-size: 12pt;" size="3"><br>
Thanks</font><font style="font-size: 12pt;" size="3"><br>
</font><font style="font-size: 12pt;" size="3">Aaron</font><br>
=
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