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<p class=MsoNormal><span style='color:#1F497D'>Update: model projections run
smoothly when “FDA=F”. Perhaps I am missing an FDA setting? Using “MDA=T”
instead (on a hunch) returns an unused argument error on MDA=T. For the record,
the model built smoothly with FDA=T.<o:p></o:p></span></p>
<p class=MsoNormal><span style='color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='color:#1F497D'>Apologies if you know this
already and I missed a previous string. <o:p></o:p></span></p>
<p class=MsoNormal><span style='color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoListParagraph style='text-indent:-.25in;mso-list:l1 level1 lfo3'><![if !supportLists]><span
style='color:#1F497D'><span style='mso-list:Ignore'>-<span style='font:7.0pt "Times New Roman"'>
</span></span></span><![endif]><span style='color:#1F497D'>DR<o:p></o:p></span></p>
<div>
<p class=MsoNormal><span lang=EN-US style='color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><b><span lang=EN-US style='color:#1F497D'>________________________<o:p></o:p></span></b></p>
<p class=MsoNormal><b><span lang=EN-US style='color:#1F497D'><o:p> </o:p></span></b></p>
<p class=MsoNormal><b><span lang=EN-US style='color:#1F497D'>David Roberts<o:p></o:p></span></b></p>
<p class=MsoNormal><span lang=EN-US style='color:#1F497D'>PhD Student<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='color:#1F497D'>Dept. of Renewable
Resources<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='color:#1F497D'>University of Alberta<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='color:#1F497D'>(780) 492-2540<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='color:#1F497D'><a
href="mailto:drr3@ualberta.ca"><span style='color:blue'>drr3@ualberta.ca</span></a><o:p></o:p></span></p>
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<p class=MsoNormal><span style='color:#1F497D'><o:p> </o:p></span></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:
"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;
font-family:"Tahoma","sans-serif"'> David Roberts [mailto:drr3@ualberta.ca] <br>
<b>Sent:</b> Wednesday, June 16, 2010 11:31 AM<br>
<b>To:</b> 'biomod-commits@lists.r-forge.r-project.org'<br>
<b>Subject:</b> Projection Error (sum (ProbData) !=0)<o:p></o:p></span></p>
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<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Greetings all,<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>I've been playing with BIOMOD for a while and think I have
it all sorted out, but I see that this error has come up before. I'm running a
species projection with all available model types for a total of 21 species.
The first three species run smoothly, but I hit this familiar error:<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Input:<o:p></o:p></p>
<p class=MsoNormal style='text-autospace:none'><span lang=EN-US
style='font-size:10.0pt;font-family:"Courier New"'>Projection(Proj=proj,
Proj.name='FIAusa', GLM=T, GBM=T, GAM=T, CTA=T, ANN=T, SRE=T, FDA=T, MARS=T,
RF=T, BinRoc=T, BinKappa=T, BinTSS=T, FiltRoc=T, FiltKappa=T, FiltTSS=T,
repetition.models=T)<o:p></o:p></span></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Output (after listing 3 successful species projections):<o:p></o:p></p>
<p class=MsoNormal><span style='font-family:"Courier New"'>Error in if
(sum(ProbData) != 0) { :<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-family:"Courier New"'> missing value
where TRUE/FALSE needed<o:p></o:p></span></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>If there’s a code setting or otherwise that might be
generating this, please do let me know. Just to clarify, I’m not running
an ensemble yet, just a regular projection. I would normally be scouring my
data file for an issue, but since the first few species run fine, I’m
confident that it’s clean.<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>R is running on a 64-bit Linux machine, if that makes any
difference.<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Thanks everyone!<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoListParagraph style='text-indent:-.25in;mso-list:l0 level1 lfo2'><![if !supportLists]><span
style='mso-list:Ignore'>-<span style='font:7.0pt "Times New Roman"'>
</span></span><![endif]>David<o:p></o:p></p>
<p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p>
<p class=MsoNormal><b><span lang=EN-US>________________________<o:p></o:p></span></b></p>
<p class=MsoNormal><b><span lang=EN-US><o:p> </o:p></span></b></p>
<p class=MsoNormal><b><span lang=EN-US>David Roberts<o:p></o:p></span></b></p>
<p class=MsoNormal><span lang=EN-US>PhD Student<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US>Dept. of Renewable Resources<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US>University of Alberta<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US>(780) 492-2540<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US><a href="mailto:drr3@ualberta.ca">drr3@ualberta.ca</a><o:p></o:p></span></p>
<p class=MsoNormal><o:p> </o:p></p>
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