<html><head><base href="x-msg://93/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Hi Rachel,</div><div>Yes, we have removed the term MDA as it is actually a FDA (flexible discriminant analysis). </div><div>We should not have any MDA anymore in the code.</div><div><br></div><div>Could you please paste the entire script you wrote, including the Models, Projection and then Ensemble.Forecasting. </div><div><br></div><div>note that we have update the Ensemble.Forecasting the last couple of days. Please update it. </div><div><br></div><div>All the best</div><div>Wilfried</div><div><br></div><div><br></div><div><br></div><br><div><div>Le 9 avr. 2010 à 19:37, Raquel A. Garcia a écrit :</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Hi</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">I have installed the latest Biomod version and am getting the following error messages when I do a trial run with 2 species:</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">When I run all the models:</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Models(GLM = T, TypeGLM = "poly", Test = "AIC", GBM = T, No.trees = 2000, GAM = T,</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Spline = 3, CTA = T, CV.tree = 50, ANN = T, CV.ann = 2, SRE = T, Perc025=T, Perc05=F, MDA = T,</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">MARS = T, RF = T, NbRunEval = 3, DataSplit = 80, Yweights=NULL, Roc = T, Optimized.Threshold.Roc = T,</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Kappa = T, TSS=T, KeepPredIndependent = T, VarImport=5, NbRepPA=2, strategy="circles",</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">coor=coordc, distance=2, nb.absences=1000)</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><span> <span class="Apple-converted-space"> </span></span>unused argument(s) (MDA = T)</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">If I set MDA to False, or replace it with FDA, I can run the models but then get an error message at the ensemble step:</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Ensemble.Forecasting(Proj.name= "test10", weight.method='Roc', PCA.median=T,</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">binary=T, bin.method='Roc', Test=F, decay=1.6, repetition.models=T)</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Error in eval(expr, envir, enclos) : object 'FDA' not found</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Any idea what might be wrong?<span> <span class="Apple-converted-space"> </span></span>Thanks in advance,</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Raquel</div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 10.5pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></div><br>_______________________________________________<br>Biomod-commits mailing list<br><a href="mailto:Biomod-commits@lists.r-forge.r-project.org">Biomod-commits@lists.r-forge.r-project.org</a><br><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits</a><br></div></span></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>--------------------------</div><div>Dr. Wilfried Thuiller</div><div>Laboratoire d'Ecologie Alpine, UMR CNRS 5553</div><div>Université Joseph Fourier</div><div>BP53, 38041 Grenoble cedex 9, France</div><div>tel: +33 (0)4 76 51 44 97</div><div>fax: +33 (0)4 76 51 42 79</div><div><br></div><div>Email: <a href="mailto:wilfried.thuiller@ujf-grenoble.fr">wilfried.thuiller@ujf-grenoble.fr</a><br>Home page: <a href="http://www.will.chez-alice.fr/">http://www.will.chez-alice.fr</a><br>Website: <a href="http://www-leca.ujf-grenoble.fr/equipes/tde.htm">http://www-leca.ujf-grenoble.fr/equipes/tde.htm</a><br><br>FP6 European MACIS project: <a href="http://www.macis-project.net/">http://www.macis-project.net</a><br>FP6 European EcoChange project: <a href="http://www.ecochange-project.eu/">http://www.ecochange-project.eu</a></div><div><br></div></span></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
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