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<body class='hmmessage'><div dir='ltr'><span style="color: rgb(68, 68, 68); font-family: Calibri; line-height: 22.7199993133545px; background-color: rgb(255, 255, 255);">Hi Gonçalo,</span><div style="line-height: 22.7199993133545px; color: rgb(68, 68, 68); font-family: Calibri; background-color: rgb(255, 255, 255);"><br style="line-height: 22.7199993133545px;"></div><div style="line-height: 22.7199993133545px; color: rgb(68, 68, 68); font-family: Calibri; background-color: rgb(255, 255, 255);">The RelCon.txt is the estimated posterior mean of relative concentrations, but what you see in bataSam is not every entry of the sample.</div><div style="line-height: 22.7199993133545px; color: rgb(68, 68, 68); font-family: Calibri; background-color: rgb(255, 255, 255);">You should find the parameter "Save results in every ? iterations:" setting in your input batmanOptions.txt file (example below), where this case it is set to record value at every 50 iterations. </div><div style="line-height: 22.7199993133545px; color: rgb(68, 68, 68); font-family: Calibri; background-color: rgb(255, 255, 255);"><div style="line-height: 22.7199993133545px;">"Save results in every ? iterations: 50"</div><div style="line-height: 22.7199993133545px;">As normally we run lots of iterations, recording every sample (not only for beta, but also delta and so on) may results in a very large output data and may take a while to write and read in, , but if you want to check, maybe set this parameter to 1?</div><div style="line-height: 22.7199993133545px;"><br style="line-height: 22.7199993133545px;"></div><div style="line-height: 22.7199993133545px;">Best</div><div style="line-height: 22.7199993133545px;"><br style="line-height: 22.7199993133545px;"></div><div style="line-height: 22.7199993133545px;">Jie</div><div style="line-height: 22.7199993133545px;"><br></div></div><br><div>> Date: Fri, 12 Jun 2015 14:56:33 +0100<br>> From: ggraca@itqb.unl.pt<br>> To: batman-users@lists.r-forge.r-project.org<br>> Subject: [Batman-users] RelCon confidence intervals<br>> <br>> Hello,<br>> <br>> I would like just to know if the values used to calculate the mean <br>> relative concentration stored in RelCon.txt are stored in any other <br>> file. I presume these values are stored in betaSam files, is this <br>> correct?<br>> Anyway, I find that the mean of betaSam for a metabolite does not match <br>> the same metabolite RelCon.<br>> Could someone clarify this?<br>> <br>> Thank you,<br>> <br>> <br>> -- <br>> Gonçalo Graça, PhD.<br>> Cell Physiology & NMR Lab<br>> Instituto de Tecnologia Química e Biológica António Xavier<br>> Universidade Nova de Lisboa<br>> Av da Republica (EAN), 2780-157 Oeiras, Portugal<br>> Tel:+351 214469561<br>> _______________________________________________<br>> Batman-users mailing list<br>> Batman-users@lists.r-forge.r-project.org<br>> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/batman-users<br></div> </div></body>
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