<div>
Thank for uploading this. It worked like magic!
</div><div><br></div><div>Best,</div><div><div>-- </div><div>Jelle Boonekamp</div><div>Behavioural Biology<br>University of Groningen<br>P.O. Box 11103<br>9700 CC Groningen<br>The Netherlands<br><br>tel: +31.50.363 7853</div><div>Sent with <a href="http://www.sparrowmailapp.com/?sig">Sparrow</a></div><div><br></div></div>
<p style="color: #A0A0A8;">On Sunday, 31 March 2013 at 12:00, basta-users-request@lists.r-forge.r-project.org wrote:</p>
<blockquote type="cite" style="border-left-style:solid;border-width:1px;margin-left:0px;padding-left:10px;">
<span><div><div><div>Send Basta-users mailing list submissions to</div><div> <a href="mailto:basta-users@lists.r-forge.r-project.org">basta-users@lists.r-forge.r-project.org</a></div><div><br></div><div>To subscribe or unsubscribe via the World Wide Web, visit</div><div> <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users</a></div><div><br></div><div>or, via email, send a message with subject or body 'help' to</div><div> <a href="mailto:basta-users-request@lists.r-forge.r-project.org">basta-users-request@lists.r-forge.r-project.org</a></div><div><br></div><div>You can reach the person managing the list at</div><div> <a href="mailto:basta-users-owner@lists.r-forge.r-project.org">basta-users-owner@lists.r-forge.r-project.org</a></div><div><br></div><div>When replying, please edit your Subject line so it is more specific</div><div>than "Re: Contents of Basta-users digest..."</div><div><br></div><div><br></div><div>Today's Topics:</div><div><br></div><div> 1. Re: Obtaining posterior values from iterations (Fernando Colchero)</div><div><br></div><div><br></div><div>----------------------------------------------------------------------</div><div><br></div><div>Message: 1</div><div>Date: Sun, 31 Mar 2013 08:06:36 +0200</div><div>From: Fernando Colchero <<a href="mailto:colchero@imada.sdu.dk">colchero@imada.sdu.dk</a>></div><div>To: Owen Jones <<a href="mailto:jonesor@gmail.com">jonesor@gmail.com</a>></div><div>Cc: "<a href="mailto:basta-users@lists.r-forge.r-project.org">basta-users@lists.r-forge.r-project.org</a>"</div><div> <<a href="mailto:basta-users@lists.r-forge.r-project.org">basta-users@lists.r-forge.r-project.org</a>></div><div>Subject: Re: [Basta-users] Obtaining posterior values from iterations</div><div>Message-ID: <<a href="mailto:60D65532-9BF4-4397-A6B6-5E828B29D5B4@imada.sdu.dk">60D65532-9BF4-4397-A6B6-5E828B29D5B4@imada.sdu.dk</a>></div><div>Content-Type: text/plain; charset="iso-8859-1"</div><div><br></div><div>Dear Jenni and BaSTA users,</div><div><br></div><div> We just uploaded to the BaSTA webpage a function to produce similar plots from the one in Colchero and Clark (2012). You can find an explanation on how to load it and use it at the end of the "Application" section of the webpage. Please, let us know if it works well.</div><div><br></div><div> Also, we strongly recommend all users to install BaSTA 1.8 from the webpage, which should be available on CRAN in the next few days. It has important bug fixes.</div><div><br></div><div> Best,</div><div><br></div><div> Fernando</div><div><br></div><div><br></div><div><br></div><div>Fernando Colchero</div><div>Assistant Professor</div><div>Department of Mathematics and Computer Science</div><div>Max-Planck Odense Center on the Biodemography of Aging</div><div><br></div><div>Tlf. +45 65 50 46 35</div><div>Email <a href="mailto:colchero@imada.sdu.dk">colchero@imada.sdu.dk</a></div><div>Web <a href="http://www.sdu.dk/staff/colchero">www.sdu.dk/staff/colchero</a></div><div>Pers. web <a href="http://www.colchero.com">www.colchero.com</a></div><div>Adr. Campusvej 55, 5230, Odense, Dk</div><div><br></div><div>University of Southern Denmark</div><div><br></div><div><br></div><div><br></div><div><br></div><div><br></div><div>On Mar 28, 2013, at 6:58 PM, Owen Jones <<a href="mailto:jonesor@gmail.com">jonesor@gmail.com</a>> wrote:</div><div><br></div><blockquote type="cite"><div><div>Dear Jenni,</div><div><br></div><div>If you have a basta object called "out", you can access the parameter traces (which are the individual iterations) by calling:</div><div><br></div><div>out$params</div><div><br></div><div>This will be a matrix with several columns (one for each parameter), and lots of rows (one for each iteration).</div><div><br></div><div>I hope this helps!</div><div><br></div><div>Cheers,</div><div>Owen</div><div><br></div><div><br></div><div>On 28 Mar 2013, at 13:33, "Graham, Jennifer" <<a href="mailto:jlg208@exeter.ac.uk">jlg208@exeter.ac.uk</a>> wrote:</div><div><br></div><blockquote type="cite"><div><div>Hey BaSTA users,</div><div><br></div><div>I would like to look at and plot the posterior distributions using the simulation results not just the estimates provided in the coefficient table, similar to the posterior distributions in Fig.5 in Colchero & Clark 2012, which appears to incorporate the asymmetry of the results. </div><div><br></div><div>Does BaSTA save the individual iterations for manual plotting and calculations? </div><div><br></div><div>Thanks</div><div><br></div><div>Jenni</div><div><br></div><div>--------------------------------------------------------------------------------</div><div>Jennifer Graham</div><div>PhD Researcher</div><div>Centre for Ecology and Conservation</div><div>University of Exeter, Cornwall Campus</div><div>Tremough</div><div>Penryn</div><div>Cornwall</div><div>TR10 9EZ</div><div>_______________________________________________</div><div>Basta-users mailing list</div><div><a href="mailto:Basta-users@lists.r-forge.r-project.org">Basta-users@lists.r-forge.r-project.org</a></div><div><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users</a></div></div></blockquote><div><br></div><div>_______________________________________________</div><div>Basta-users mailing list</div><div><a href="mailto:Basta-users@lists.r-forge.r-project.org">Basta-users@lists.r-forge.r-project.org</a></div><div><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users</a></div></div></blockquote><div><br></div><div>-------------- next part --------------</div><div>An HTML attachment was scrubbed...</div><div>URL: <<a href="http://lists.r-forge.r-project.org/pipermail/basta-users/attachments/20130331/78bbead3/attachment-0001.html">http://lists.r-forge.r-project.org/pipermail/basta-users/attachments/20130331/78bbead3/attachment-0001.html</a>></div><div><br></div><div>------------------------------</div><div><br></div><div>_______________________________________________</div><div>Basta-users mailing list</div><div><a href="mailto:Basta-users@lists.r-forge.r-project.org">Basta-users@lists.r-forge.r-project.org</a></div><div><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users</a></div><div><br></div><div><br></div><div>End of Basta-users Digest, Vol 10, Issue 2</div><div>******************************************</div></div></div></span>
</blockquote>
<div>
<br>
</div>