<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Cliff,<div><br></div><div> Were all birth times in 1978? If that's the case, then the life table cannot be constructed because it uses non-truncated individuals (i.e. only those that were born during the study). Still, we do have a bug, since the model should report that more explicitly. We'll try to fix it as soon as possible.</div><div><br></div><div> Best,</div><div><br></div><div> Fernando<br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br class="Apple-interchange-newline">______________________________________________</div><div><div> </div><div>Fernando Colchero</div><div><br></div><div>Max Planck Institute for Demographic Research</div><div>Konrad Zuse Str. 1, 18057, Rostock, Germany</div><div>Tel: +49 (0) 381 2081 113</div><div>Fax: +49 (0) 381 2081 529</div><div><div>E-mail: <a href="mailto:Colchero@demogr.mpg.de">Colchero@demogr.mpg.de</a></div></div><div>______________________________________________</div></div><div><br></div><div><br></div></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline"></span>
</div>
<br><div><div>On Nov 7, 2011, at 11:03 AM, Cliff Cunningham wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear BaSTa,<div><div><span class="Apple-tab-span" style="white-space: pre; "> </span>After several runs I have typed out$lifetable and got the following</div><div><br></div><div><div>> out$lifetable</div><div>NULL</div></div><div><br></div><div><span class="Apple-tab-span" style="white-space: pre; "> </span>I should report I got several warning messages (see bottom) when I ran the following: </div><div><div>Survival parameters converged appropriately. </div><div>DIC was calculated</div><div>.Warning messages:</div><div>1: In max(DeathAges, na.rm = TRUE) :</div><div> no non-missing arguments to max; returning -Inf</div><div>2: In max(wa) : no non-missing arguments to max; returning -Inf</div><div>3: In MakeLifeTable(x, ax = 0.5, n = 1) : NAs introduced by coercion</div></div><div><br></div><div><br></div><div>My code was as follows, </div><div><br></div><div><div>out <- basta(object = Males.dat$newData, studyStart = 1979, studyEnd = 1982, burnin=1000 ,niter=10000, nsim=4, parallel=TRUE, ncpus=4)</div></div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>In this one I had all the birthdays at 1978, and first captures in 1979.</div><div><br></div><div><br></div><div><br></div><div><br></div><div>Here are the errors from the </div><div>Multiple simulations finished.<div>Total MCMC computing time: 3.91 minutes</div><div><br></div><div>Thanks so much!!</div><div><div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "> <span class="Apple-converted-space"> </span><span class="Apple-tab-span" style="white-space: pre; "> </span>Cliff Cunningham</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><br class="Apple-interchange-newline"> Professor</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Biology Department</div><div style="font-size: 12px; "> <span class="Apple-tab-span" style="white-space: pre; "> </span>Duke University</div><div style="font-size: 12px; "> 130 Science Drive</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Durham NC 27708<br class="webkit-block-placeholder"></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Phone 919-660-7356<br></div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><a href="http://www.biology.duke.edu/cunningham">http://www.biology.duke.edu/cunningham</a></div><div style="font-size: 12px; "><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
</div>
<br></div></div></div></div>_______________________________________________<br>Basta-users mailing list<br><a href="mailto:Basta-users@lists.r-forge.r-project.org">Basta-users@lists.r-forge.r-project.org</a><br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users<br></blockquote></div><br></div>
<p><span style="font-family:'Arial';font-size:8pt;">----------</span></p>
<p><span style="font-family:'Arial';font-size:8pt;">This mail has been sent through the MPI for Demographic Research. Should you receive a mail that is apparently from a MPI user without this text displayed, then the address has most likely been faked. If you are uncertain about the validity of this message, please check the mail header or ask your system administrator for assistance.</span></p>
<p><span style="font-family:'Arial';font-size:8pt;"> </span></p></body></html>