<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Fernando and Owen,<div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>I get the "NULL" when I type</div><div>out$lifetable</div><div><br></div><div>even when I make all the birthdates at 1979 (within the time of the study), though these errors disappear:</div><div><br></div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div>.Warning messages:</div><div>1: In max(DeathAges, na.rm = TRUE) :</div><div> no non-missing arguments to max; returning -Inf</div><div>2: In max(wa) : no non-missing arguments to max; returning -Inf</div><div>3: In MakeLifeTable(x, ax = 0.5, n = 1) : NAs introduced by coercion</div></div></div></div></blockquote></div></div></div></blockquote><div><br></div><br><div><br><div><span class="Apple-tab-span" style="white-space:pre"> </span>On the very bright side I was able to calculate a great life table by hand that made perfect sense when I used</div><div><br></div><div>out$Xq</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>to output all the ages at death. This gave exactly the qx's I was expecting (since this example had 100% recapture rate, just to test the output). </div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>So its not that it wasn't calculating the ages at death.<br><div>
<div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>All the best!</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "> <span class="Apple-converted-space"> </span><span class="Apple-tab-span" style="white-space: pre; "> </span>Cliff Cunningham</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><br class="Apple-interchange-newline"> Professor</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Biology Department</div><div style="font-size: 12px; "> <span class="Apple-tab-span" style="white-space: pre; "> </span>Duke University</div><div style="font-size: 12px; "> 130 Science Drive</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Durham NC 27708<br class="webkit-block-placeholder"></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Phone 919-660-7356<br></div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><a href="http://www.biology.duke.edu/cunningham">http://www.biology.duke.edu/cunningham</a></div><div style="font-size: 12px; "><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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<br><div><div>On Nov 7, 2011, at 11:23 AM, Colchero, Fernando wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Cliff,<div><br></div><div> Were all birth times in 1978? If that's the case, then the life table cannot be constructed because it uses non-truncated individuals (i.e. only those that were born during the study). Still, we do have a bug, since the model should report that more explicitly. We'll try to fix it as soon as possible.</div><div><br></div><div> Best,</div><div><br></div><div> Fernando<br><div>
<span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br class="Apple-interchange-newline">______________________________________________</div><div><div> </div><div>Fernando Colchero</div><div><br></div><div>Max Planck Institute for Demographic Research</div><div>Konrad Zuse Str. 1, 18057, Rostock, Germany</div><div>Tel: +49 (0) 381 2081 113</div><div>Fax: +49 (0) 381 2081 529</div><div><div>E-mail: <a href="mailto:Colchero@demogr.mpg.de">Colchero@demogr.mpg.de</a></div></div><div>______________________________________________</div></div><div><br></div><div><br></div></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline"></span>
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<br><div><div>On Nov 7, 2011, at 11:03 AM, Cliff Cunningham wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear BaSTa,<div><div><span class="Apple-tab-span" style="white-space: pre; "> </span>After several runs I have typed out$lifetable and got the following</div><div><br></div><div><div>> out$lifetable</div><div>NULL</div></div><div><br></div><div><span class="Apple-tab-span" style="white-space: pre; "> </span>I should report I got several warning messages (see bottom) when I ran the following: </div><div><div>Survival parameters converged appropriately. </div><div>DIC was calculated</div><div>.Warning messages:</div><div>1: In max(DeathAges, na.rm = TRUE) :</div><div> no non-missing arguments to max; returning -Inf</div><div>2: In max(wa) : no non-missing arguments to max; returning -Inf</div><div>3: In MakeLifeTable(x, ax = 0.5, n = 1) : NAs introduced by coercion</div></div><div><br></div><div><br></div><div>My code was as follows, </div><div><br></div><div><div>out <- basta(object = Males.dat$newData, studyStart = 1979, studyEnd = 1982, burnin=1000 ,niter=10000, nsim=4, parallel=TRUE, ncpus=4)</div></div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>In this one I had all the birthdays at 1978, and first captures in 1979.</div><div><br></div><div><br></div><div><br></div><div><br></div><div>Here are the errors from the </div><div>Multiple simulations finished.<div>Total MCMC computing time: 3.91 minutes</div><div><br></div><div>Thanks so much!!</div><div><div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "> <span class="Apple-converted-space"> </span><span class="Apple-tab-span" style="white-space: pre; "> </span>Cliff Cunningham</div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><br class="Apple-interchange-newline"> Professor</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Biology Department</div><div style="font-size: 12px; "> <span class="Apple-tab-span" style="white-space: pre; "> </span>Duke University</div><div style="font-size: 12px; "> 130 Science Drive</div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Durham NC 27708<br class="webkit-block-placeholder"></div><div style="font-size: 12px; "><span class="Apple-tab-span" style="white-space: pre; "> </span>Phone 919-660-7356<br></div><div style="font-size: 12px; "><br></div><div style="font-size: 12px; "><a href="http://www.biology.duke.edu/cunningham">http://www.biology.duke.edu/cunningham</a></div><div style="font-size: 12px; "><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"><br class="Apple-interchange-newline">
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