[Analogue-commits] r413 - in pkg: . R inst
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Apr 15 22:07:51 CEST 2014
Author: gsimpson
Date: 2014-04-15 22:07:50 +0200 (Tue, 15 Apr 2014)
New Revision: 413
Modified:
pkg/DESCRIPTION
pkg/R/roc.R
pkg/inst/ChangeLog
Log:
fix bug in AUC calculation; bump to 0.13-5
Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION 2014-02-14 23:07:08 UTC (rev 412)
+++ pkg/DESCRIPTION 2014-04-15 20:07:50 UTC (rev 413)
@@ -1,7 +1,7 @@
Package: analogue
Type: Package
Title: Analogue and weighted averaging methods for palaeoecology
-Version: 0.13-4
+Version: 0.13-5
Date: $Date$
Depends: R (>= 2.15.0), vegan (>= 1.17-12), lattice, rgl
Imports: mgcv, MASS, stats, graphics, grid, brglm, princurve
Modified: pkg/R/roc.R
===================================================================
--- pkg/R/roc.R 2014-02-14 23:07:08 UTC (rev 412)
+++ pkg/R/roc.R 2014-04-15 20:07:50 UTC (rev 413)
@@ -37,7 +37,7 @@
optimal <- as.numeric(names(max.roc <- which.max(roc.values)))
names(FPE) <- names(TPF) <- names(roc.values) <- NULL
wilcox <- wilcox.test(IN, OUT, conf.int = FALSE)
- AUC <- 1 - (wilcox$statistic / (n.OUT * n.OUT))
+ AUC <- 1 - (wilcox$statistic / (n.IN * n.OUT))
AUC2 <- AUC^2
q1 <- AUC / (2-AUC)
q2 <- (2 * AUC2) / (1 + AUC)
Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog 2014-02-14 23:07:08 UTC (rev 412)
+++ pkg/inst/ChangeLog 2014-04-15 20:07:50 UTC (rev 413)
@@ -1,5 +1,9 @@
analogue Change Log
+Version 0.13-5
+
+ * roc: fix a bug in the computation of AUC from the U statistic.
+
Version 0.13-4 13 Feb 2014
* crossval.pcr: Fixed a number of bugs in the method for PCR
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