[Analogue-commits] r226 - in pkg: R man

[noreply at r-forge.r-project.org]

Author: gsimpson
Date: 2011-08-23 10:44:33 +0200 (Tue, 23 Aug 2011)
New Revision: 226

Modified:
   pkg/R/tolerance.R
   pkg/man/optima.Rd
Log:
fix the S3 method defs for tolerance() as the generic is now in vegan

Modified: pkg/R/tolerance.R
===================================================================
--- pkg/R/tolerance.R	2011-08-23 08:43:33 UTC (rev 225)
+++ pkg/R/tolerance.R	2011-08-23 08:44:33 UTC (rev 226)
@@ -1,7 +1,7 @@
 ## User function to compute weighted average tolerances for taxa
 
-`tolerance` <- function(x, ...)
-    UseMethod("tolerance")
+## `tolerance` <- function(x, ...)
+##    UseMethod("tolerance")
 
 `tolerance.default` <- function(x, env, useN2 = TRUE, ...) {
     x <- data.matrix(x)

Modified: pkg/man/optima.Rd
===================================================================
--- pkg/man/optima.Rd	2011-08-23 08:43:33 UTC (rev 225)
+++ pkg/man/optima.Rd	2011-08-23 08:44:33 UTC (rev 226)
@@ -2,7 +2,6 @@
 \alias{optima}
 \alias{optima.default}
 \alias{print.optima}
-\alias{tolerance}
 \alias{print.tolerance}
 \alias{tolerance.default}
 \alias{as.data.frame.optima}
@@ -18,8 +17,6 @@
 
 \method{optima}{default}(x, env, ...)
 
-tolerance(x, ...)
-
 \method{tolerance}{default}(x, env, useN2 = TRUE, ...)
 }
 %- maybe also 'usage' for other objects documented here.