[Analogue-commits] r182 - in pkg: . data inst man

[noreply at r-forge.r-project.org]

Author: gsimpson
Date: 2010-06-29 14:34:40 +0200 (Tue, 29 Jun 2010)
New Revision: 182

Added:
   pkg/data/abernethy.rda
   pkg/man/abernethy.Rd
Modified:
   pkg/DESCRIPTION
   pkg/inst/ChangeLog
Log:
bump to 0.6-26, adds abernethy data and changes to dependencies, Stratiplot.formula and chooseTaxa

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2010-06-29 12:29:17 UTC (rev 181)
+++ pkg/DESCRIPTION	2010-06-29 12:34:40 UTC (rev 182)
@@ -1,7 +1,7 @@
 Package: analogue
 Type: Package
 Title: Analogue and weighted averaging methods for palaeoecology
-Version: 0.6-25
+Version: 0.6-26
 Date: $Date$
 Depends: R (>= 2.5.0), stats, graphics, vegan, lattice, grid, MASS
 Author: Gavin L. Simpson, Jari Oksanen

Added: pkg/data/abernethy.rda
===================================================================
(Binary files differ)


Property changes on: pkg/data/abernethy.rda
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2010-06-29 12:29:17 UTC (rev 181)
+++ pkg/inst/ChangeLog	2010-06-29 12:34:40 UTC (rev 182)
@@ -1,5 +1,18 @@
 analogue Change Log
 
+Version 0.6-26
+
+	* abernethy: New data set containing the classic Abernethy Forest
+	data of Birks and Mathewes (1978).
+
+	* Stratiplot.formula: Preserves the names component as far as is
+	possible.
+
+	* chooseTaxa: Explicitly preserves row and column names.
+
+	* DESCRIPTION: prematurely added princurve as a dependency in
+	previous version.
+
 Version 0.6-25
 
 	* chooseTaxa: new function to select species on basis of number

Added: pkg/man/abernethy.Rd
===================================================================
--- pkg/man/abernethy.Rd	                        (rev 0)
+++ pkg/man/abernethy.Rd	2010-06-29 12:34:40 UTC (rev 182)
@@ -0,0 +1,43 @@
+\name{abernethy}
+\alias{abernethy}
+\docType{data}
+\title{Abernethy Forest Pollen Sequence}
+\description{
+  The classic pollen data set from Abernethy Forest in the Scottish
+  highlands, UK. The data originate from the work of Hilary Birks and
+  Rolf Mathewes (1978) and have been analysed in several texts on
+  quantitative numerical palaeoecology.
+
+  The data set consists of 36 pollen taxa from 49 levels, with two
+  additional variables; \code{Age}, the age of each sample, and
+  \code{Depth} the depth (in cm) below the surface of the peat sequence
+  from which the core was taken.
+}
+\usage{
+data(abernethy)
+}
+\format{
+  \code{abernethy} is a data frame with 49 samples on 36 species plus
+  sample Age and Depth (in cm).
+}
+%\details{
+%  ~~ If necessary, more details than the __description__ above ~~
+%}
+\source{
+  These data were provided in electronic format by Prof. H. John
+  B. Birks. The original source is Birks and Mathewes (1978).
+}
+\references{
+  Birks, H.H. and Mathewes, R.W. (1978) Studies in the vegetational
+  history of Scotland. \emph{New Phytologist} \strong{80}, 455-484.
+}
+\examples{
+data(abernethy)
+head(abernethy)
+
+(plt <- Stratiplot(Age ~ . - Depth,
+                   data = chooseTaxa(abernethy, n.occ = 5,
+                                     max.abun = 10),
+                   type = "poly"))
+}
+\keyword{datasets}