[Analogue-commits] r144 - in pkg: . inst

[noreply at r-forge.r-project.org]

Author: gsimpson
Date: 2009-08-15 23:17:25 +0200 (Sat, 15 Aug 2009)
New Revision: 144

Modified:
   pkg/DESCRIPTION
   pkg/inst/ChangeLog
Log:
Changelog and version bump for r143

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2009-08-15 16:52:56 UTC (rev 143)
+++ pkg/DESCRIPTION	2009-08-15 21:17:25 UTC (rev 144)
@@ -1,7 +1,7 @@
 Package: analogue
 Type: Package
 Title: Analogue and weighted averaging methods for palaeoecology
-Version: 0.6-16
+Version: 0.6-17
 Date: $Date$
 Depends: R (>= 2.5.0), stats, graphics, vegan, lattice, MASS
 Author: Gavin L. Simpson, Jari Oksanen

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2009-08-15 16:52:56 UTC (rev 143)
+++ pkg/inst/ChangeLog	2009-08-15 21:17:25 UTC (rev 144)
@@ -1,5 +1,10 @@
 analogue Change Log
 
+Version 0.6-17
+
+	* predict.wa: deshrinking method was not being honoured when
+	expanding predictions.
+
 Version 0.6-16
 
 	* roc: For large problems the calculation of AUC and its standard
@@ -16,16 +21,16 @@
 
 Version 0.6-14
 
-	* tran: new transformation and standardization methods for the power 
-	and 4th root transformation, the log ratio transformation for 
-	compositional data, plus row (sample) centring. 
+	* tran: new transformation and standardization methods for the power
+	and 4th root transformation, the log ratio transformation for
+	compositional data, plus row (sample) centring.
 
 Version 0.6-13
 
 	* predict.wa: Now handles WA with tolerance down-weighting for
 	bootstrap CV and benefits from the changes introduced in previous
 	version.
-	
+
 Version 0.6-12
 
 	* deshrink, deshrinkPred: New utility functions for deshrinking WA
@@ -40,7 +45,7 @@
 
 	* predict.wa, wa, WATpred: Now use faster C code for computing
 	predictions from WA models with tolerance down-weighting.
-	
+
 Version 0.6-10
 
 	* predict.wa: Predictions with tolerance DW now works for CV = "LOO"
@@ -52,7 +57,7 @@
 
 	* w.tol: Internal function w.tol now uses a faster C version of the
 	code.
-	
+
 Version 0.6-9 (Closed Sun 7 June 2009)
 
 	* predict.wa: Predictions without CV can now be made for WA models
@@ -66,7 +71,7 @@
 
 Version 0.6-8 (Closed Mon 5 May 2009)
 
-	* residLen: new function to compute squared residual length 
+	* residLen: new function to compute squared residual length
 	diagnostic for passive samples in a constrained ordination. Used as
 	a test of whether core samples are well fitted in a transfer function
 	model.
@@ -88,14 +93,14 @@
 
 	Methods are available for 'mat' and 'predict.mat'.
 
-	* predict.mat: now returns the dissimilarity matrix between the 
+	* predict.mat: now returns the dissimilarity matrix between the
 	training set samples and samples in 'newdata'.
 
 	* getK: new method for 'predict.mat'.
 
 	* CITATION: updated as per request from Kurt Hornik and CRAN.
 
-Version 0.6-7 (Closed Mon 13 Apr 2009) 
+Version 0.6-7 (Closed Mon 13 Apr 2009)
 
 	* optima, tolerance: new methods to coerce objects of these classes
 	to data frames.
@@ -105,7 +110,7 @@
 
 Version 0.6-6 (Released to CRAN: Wed 25th Feb 2009)
 
-	* optima, tolerance: New print methods for both functions. Returned 
+	* optima, tolerance: New print methods for both functions. Returned
 	objects now have additional attributes.
 
 	* join: new methods for 'head' and 'tail' to return the first/last