<div dir="ltr">Hi Gema, <div><br></div><div>sorry, I won't be able to help personally, too many things going on atm. But I suspect you'll find help on the ade4 mailing list, which is much more ecology-focussed:<br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><a href="https://listes.univ-lyon1.fr/sympa/info/adelist">https://listes.univ-lyon1.fr/sympa/info/adelist</a><br></div><div><br></div><div>Best</div><div>Thibaut</div><div><font face="arial, helvetica, sans-serif">--<br>Dr Thibaut Jombart<br>Associate Professor in Outbreak Analytics, London School of Hygiene and Tropical Medicine<br>Senior Lecturer in Genetic Analysis, Imperial College London</font></div><div><font face="arial, helvetica, sans-serif">UK Public Health Rapid Support Team</font></div><div><font face="arial, helvetica, sans-serif">President of RECON: <a href="http://repidemicsconsortium.org" target="_blank">repidemicsconsortium.org</a></font></div><div><font face="arial, helvetica, sans-serif"><a href="https://thibautjombart.netlify.com" style="letter-spacing:0.2px" target="_blank">https://thibautjombart.netlify.com</a><br></font></div><div><font face="arial, helvetica, sans-serif">Twitter: @TeebzR</font><br></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, 9 Mar 2020 at 10:33, Gema Fernández-Avilés Calderón <<a href="mailto:Gema.FAviles@uclm.es">Gema.FAviles@uclm.es</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<p class="MsoNormal"><span>Dear </span>Thibaut,<u></u><u></u></p>
<p class="MsoNormal">Thank you for your mail. I have reading about 'multispati', and if I’m not wrong, it does not work with the temporal dimensión. The database “mafragh" contaisn environmental variables in diferent locations but not in a time period.<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">May I send you and example of my database by email?<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">Thanks in advance,<u></u><u></u></p>
<p class="MsoNormal">Gema<span style="font-family:"Courier New";color:rgb(68,114,196)"><u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";color:rgb(68,114,196)"><u></u> <u></u></span></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Gema Fernández-Avilés Calderón<br>
</span></b><i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Profesora Titular de Universidad</span></i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"><u></u><u></u></span></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Universidad de Castilla-La Mancha</span></b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"><br>
FACULTAD CC. JURÍDICAS Y SOCIALES TO | Cobertizo San Pedro Mártir, SN | 45071 Toledo<br>
Tfno: </span><span style="color:rgb(0,32,96)"><a href="tel:+34:925268800" title="LLama a 925 268 800" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50)">925 268 800</span></a></span><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"> | Ext: </span><span style="color:rgb(0,32,96)"><a href="tel:+34:5134" title="LLama a 5134" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50)">5134</span></a></span><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"> | </span><span style="color:rgb(0,32,96)"><a href="mailto:Gema.FAviles@uclm.es" title="Enviar correo a Gema.FAviles@uclm.es" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50)">Gema.FAviles@uclm.es</span></a></span><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">
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<p class="MsoNormal"><span style="color:rgb(31,73,125)"> </span><a href="http://orcid.org/0000-0001-5934-1916" title=""Ir a la página ORCID" t" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50);text-decoration:none"><img border="0" width="57" height="18" style="width: 0.5937in; height: 0.1875in;" id="gmail-m_2399735985614775294Imagen_x0020_2" src="cid:170beeb3dd25b006a2"></span></a><u></u><u></u></p>
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<p class="MsoNormal"><b>De:</b> Thibaut Jombart <<a href="mailto:thibautjombart@gmail.com" target="_blank">thibautjombart@gmail.com</a>> <br>
<b>Enviado el:</b> jueves, 5 de marzo de 2020 19:19<br>
<b>Para:</b> Fernando Hernández <<a href="mailto:fernando.hernandez33@outlook.com" target="_blank">fernando.hernandez33@outlook.com</a>><br>
<b>CC:</b> <a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>; <a href="mailto:jombart@biomserv.univ-lyon1.fr" target="_blank">jombart@biomserv.univ-lyon1.fr</a>; Gema Fernández-Avilés Calderón <<a href="mailto:Gema.FAviles@uclm.es" target="_blank">Gema.FAviles@uclm.es</a>><br>
<b>Asunto:</b> Re: [adegenet-forum] Responder: RV: From genotypes to pollution data<u></u><u></u></p>
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<p class="MsoNormal">Dear Gema, <u></u><u></u></p>
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<p class="MsoNormal">sorry for the late reply. The analysis you describe does exist. It is called 'multispati', and was originally in ade4, now in adespatial:<u></u><u></u></p>
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<p class="MsoNormal"><a href="https://rdrr.io/cran/adespatial/man/multispati.html" target="_blank">https://rdrr.io/cran/adespatial/man/multispati.html</a><u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">A different problem to LDA / DAPC or variants.<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Best<u></u><u></u></p>
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<p class="MsoNormal">Thibaut<br clear="all">
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<p class="MsoNormal"><span style="font-family:Arial,sans-serif">--<br>
Dr Thibaut Jombart<br>
Associate Professor in Outbreak Analytics, London School of Hygiene and Tropical Medicine<br>
Senior Lecturer in Genetic Analysis, Imperial College London</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:Arial,sans-serif">UK Public Health Rapid Support Team</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:Arial,sans-serif">President of RECON:
<a href="http://repidemicsconsortium.org" target="_blank">repidemicsconsortium.org</a></span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:Arial,sans-serif"><a href="https://thibautjombart.netlify.com" target="_blank"><span style="letter-spacing:0.15pt">https://thibautjombart.netlify.com</span></a></span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:Arial,sans-serif">Twitter: @TeebzR</span><u></u><u></u></p>
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<p class="MsoNormal">On Thu, 5 Mar 2020 at 18:14, Fernando Hernández <<a href="mailto:fernando.hernandez33@outlook.com" target="_blank">fernando.hernandez33@outlook.com</a>> wrote:<u></u><u></u></p>
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<p style="margin:0cm 0cm 0.0001pt">Dear Gema, <u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p style="margin:0cm 0cm 0.0001pt">I recommend you the use of other packages to run principal components or discriminant analyses.
<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p style="margin:0cm 0cm 0.0001pt">If you are interested in some features of DAPC, a linear discriminant analysis probably is more suitable to you.
<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p style="margin:0cm 0cm 0.0001pt">Saludos<u></u><u></u></p>
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---- Gema Fernández-Avilés Calderón escribió ----<u></u><u></u></p>
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<p class="MsoNormal">Dear authors,<u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal">I was wandering If you had revived this email.<u></u><u></u></p>
<p class="MsoNormal">Thanks in advance,<u></u><u></u></p>
<p class="MsoNormal">Gema<u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Courier New";color:rgb(68,114,196)"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Courier New";color:rgb(68,114,196)"> </span><u></u><u></u></p>
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<p class="MsoNormal">Dear friends,<u></u><u></u></p>
<p class="MsoNormal">I was wandering If you had revived this email.<u></u><u></u></p>
<p class="MsoNormal">Thanks in advance,<u></u><u></u></p>
<p class="MsoNormal">Gema<u></u><u></u></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Gema Fernández-Avilés Calderón<br>
</span></b><i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Profesora Titular de Universidad</span></i><u></u><u></u></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Universidad de Castilla-La Mancha</span></b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"><br>
FACULTAD CC. JURÍDICAS Y SOCIALES TO | Cobertizo San Pedro Mártir, SN | 45071 Toledo<br>
Tfno: </span><span style="color:rgb(0,32,96)"><a href="tel:+34:925268800" title="LLama a 925 268 800" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50)">925 268 800</span></a></span><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"> | Ext: </span><span style="color:rgb(0,32,96)"><a href="tel:+34:5134" title="LLama a 5134" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50)">5134</span></a></span><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"> | </span><span style="color:rgb(0,32,96)"><a href="mailto:Gema.FAviles@uclm.es" title="Enviar correo a Gema.FAviles@uclm.es" target="_blank"><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(180,0,50)">Gema.FAviles@uclm.es</span></a></span><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">
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<p class="MsoNormal"><b>De:</b> Gema Fernández-Avilés Calderón
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<b>Enviado el:</b> martes, 25 de febrero de 2020 23:16<br>
<b>Para:</b> <a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">
adegenet-forum@lists.r-forge.r-project.org</a>; <a href="mailto:jombart@biomserv.univ-lyon1.fr" target="_blank">
jombart@biomserv.univ-lyon1.fr</a><br>
<b>Asunto:</b> From genotypes to pollution data<u></u><u></u></p>
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<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Dear all,</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">I would like to carry out sPCA with pollution data. I mean, I have 10 Monitoring station with x,y coordinates that measure 6
pollutans every day for one year. A matrix (365x6) for 10 monitoring stations.</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Can I extrapolate your idea to pollution data?</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">I don’t know how to run data. I don’t know how to create the object in R.</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Do you have some idea? I can sent a dataset similar (I’m constructing actually this dataset)</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Best and thanks,</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Gema</span><u></u><u></u></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span><u></u><u></u></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Gema Fernández-Avilés Calderón<br>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Universidad de Castilla-La Mancha</span></b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"><br>
FACULTAD CC. JURÍDICAS Y SOCIALES TO | Cobertizo San Pedro Mártir, SN | 45071 Toledo<br>
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