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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Dear </span>Thibaut,<o:p></o:p></p>
<p class="MsoNormal">Thank you for your mail. I have reading about 'multispati', and if I’m not wrong, it does not work with the temporal dimensión. The database “mafragh" contaisn environmental variables in diferent locations but not in a time period.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">May I send you and example of my database by email?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thanks in advance,<o:p></o:p></p>
<p class="MsoNormal">Gema<span style="font-family:"Courier New";color:#4472C4"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#3B3B3B">Gema Fernández-Avilés Calderón<br>
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<p class="MsoNormal"><b><span style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#3B3B3B">Universidad de Castilla-La Mancha</span></b><span style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#3B3B3B"><br>
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<p class="MsoNormal"><b>De:</b> Thibaut Jombart <thibautjombart@gmail.com> <br>
<b>Enviado el:</b> jueves, 5 de marzo de 2020 19:19<br>
<b>Para:</b> Fernando Hernández <fernando.hernandez33@outlook.com><br>
<b>CC:</b> adegenet-forum@lists.r-forge.r-project.org; jombart@biomserv.univ-lyon1.fr; Gema Fernández-Avilés Calderón <Gema.FAviles@uclm.es><br>
<b>Asunto:</b> Re: [adegenet-forum] Responder: RV: From genotypes to pollution data<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Dear Gema, <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">sorry for the late reply. The analysis you describe does exist. It is called 'multispati', and was originally in ade4, now in adespatial:<o:p></o:p></p>
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<p class="MsoNormal"><a href="https://rdrr.io/cran/adespatial/man/multispati.html">https://rdrr.io/cran/adespatial/man/multispati.html</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">A different problem to LDA / DAPC or variants.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Best<o:p></o:p></p>
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<p class="MsoNormal">Thibaut<br clear="all">
<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">--<br>
Dr Thibaut Jombart<br>
Associate Professor in Outbreak Analytics, London School of Hygiene and Tropical Medicine<br>
Senior Lecturer in Genetic Analysis, Imperial College London</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">UK Public Health Rapid Support Team</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">President of RECON:
<a href="http://repidemicsconsortium.org" target="_blank">repidemicsconsortium.org</a></span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif"><a href="https://thibautjombart.netlify.com" target="_blank"><span style="letter-spacing:.15pt">https://thibautjombart.netlify.com</span></a></span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-family:"Arial",sans-serif">Twitter: @TeebzR</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Thu, 5 Mar 2020 at 18:14, Fernando Hernández <<a href="mailto:fernando.hernandez33@outlook.com">fernando.hernandez33@outlook.com</a>> wrote:<o:p></o:p></p>
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<p style="margin:0cm;margin-bottom:.0001pt">Dear Gema, <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p style="margin:0cm;margin-bottom:.0001pt">I recommend you the use of other packages to run principal components or discriminant analyses.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p style="margin:0cm;margin-bottom:.0001pt">If you are interested in some features of DAPC, a linear discriminant analysis probably is more suitable to you.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p style="margin:0cm;margin-bottom:.0001pt">Saludos<o:p></o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><br>
<br>
---- Gema Fernández-Avilés Calderón escribió ----<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Dear authors,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I was wandering If you had revived this email.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks in advance,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Gema<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Dear friends,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I was wandering If you had revived this email.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks in advance,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Gema<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b>De:</b> Gema Fernández-Avilés Calderón
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<b>Enviado el:</b> martes, 25 de febrero de 2020 23:16<br>
<b>Para:</b> <a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">
adegenet-forum@lists.r-forge.r-project.org</a>; <a href="mailto:jombart@biomserv.univ-lyon1.fr" target="_blank">
jombart@biomserv.univ-lyon1.fr</a><br>
<b>Asunto:</b> From genotypes to pollution data<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">Dear all,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">I would like to carry out sPCA with pollution data. I mean, I have 10 Monitoring station with x,y coordinates that measure 6
pollutans every day for one year. A matrix (365x6) for 10 monitoring stations.</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">Can I extrapolate your idea to pollution data?</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">I don’t know how to run data. I don’t know how to create the object in R.</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">Do you have some idea? I can sent a dataset similar (I’m constructing actually this dataset)</span><o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">Best and thanks,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" style="font-family:"Courier New"">Gema</span><o:p></o:p></p>
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</span></b><i><span style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#3B3B3B">Profesora Titular de Universidad</span></i><o:p></o:p></p>
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