<div dir="ltr">Dear Gema, <div><br></div><div>sorry for the late reply. The analysis you describe does exist. It is called 'multispati', and was originally in ade4, now in adespatial:</div><div><a href="https://rdrr.io/cran/adespatial/man/multispati.html">https://rdrr.io/cran/adespatial/man/multispati.html</a></div><div><br></div><div>A different problem to LDA / DAPC or variants.</div><div><br></div><div>Best</div><div>Thibaut<br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><br></div><div><font face="arial, helvetica, sans-serif">--<br>Dr Thibaut Jombart<br>Associate Professor in Outbreak Analytics, London School of Hygiene and Tropical Medicine<br>Senior Lecturer in Genetic Analysis, Imperial College London</font></div><div><font face="arial, helvetica, sans-serif">UK Public Health Rapid Support Team</font></div><div><font face="arial, helvetica, sans-serif">President of RECON: <a href="http://repidemicsconsortium.org" target="_blank">repidemicsconsortium.org</a></font></div><div><font face="arial, helvetica, sans-serif"><a href="https://thibautjombart.netlify.com" style="letter-spacing:0.2px" target="_blank">https://thibautjombart.netlify.com</a><br></font></div><div><font face="arial, helvetica, sans-serif">Twitter: @TeebzR</font><br></div></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, 5 Mar 2020 at 18:14, Fernando Hernández <<a href="mailto:fernando.hernandez33@outlook.com">fernando.hernandez33@outlook.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div lang="ES">
<p dir="ltr" style="margin-top:0px;margin-bottom:0px">Dear Gema, </p>
<br>
<p dir="ltr" style="margin-top:0px;margin-bottom:0px">I recommend you the use of other packages to run principal components or discriminant analyses.
</p>
<br>
<p dir="ltr" style="margin-top:0px;margin-bottom:0px">If you are interested in some features of DAPC, a linear discriminant analysis probably is more suitable to you.
</p>
<br>
<p dir="ltr" style="margin-top:0px;margin-bottom:0px">Saludos</p>
<br>
<br>
---- Gema Fernández-Avilés Calderón escribió ----<br>
<br>
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<p class="MsoNormal">Dear authors,</p>
<p class="MsoNormal"><span> </span></p>
<p class="MsoNormal">I was wandering If you had revived this email.</p>
<p class="MsoNormal">Thanks in advance,</p>
<p class="MsoNormal">Gema</p>
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<p class="MsoNormal">Dear friends,<span></span></p>
<p class="MsoNormal">I was wandering If you had revived this email.</p>
<p class="MsoNormal">Thanks in advance,</p>
<p class="MsoNormal">Gema<span style="font-family:"Courier New";color:rgb(68,114,196)"></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New";color:rgb(68,114,196)"> </span></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Gema Fernández-Avilés Calderón<br>
</span></b><i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Profesora Titular de Universidad</span></i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"></span></p>
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<p class="MsoNormal"><b><span>De:</span></b><span> Gema Fernández-Avilés Calderón
<br>
<b>Enviado el:</b> martes, 25 de febrero de 2020 23:16<br>
<b>Para:</b> <a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>; <a href="mailto:jombart@biomserv.univ-lyon1.fr" target="_blank">jombart@biomserv.univ-lyon1.fr</a><br>
<b>Asunto:</b> From genotypes to pollution data</span></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Dear all,</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">I would like to carry out sPCA with pollution data. I mean, I have 10 Monitoring station with x,y coordinates that measure 6 pollutans every day for one year. A matrix (365x6) for 10
monitoring stations.</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Can I extrapolate your idea to pollution data?</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">I don’t know how to run data. I don’t know how to create the object in R.</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Do you have some idea? I can sent a dataset similar (I’m constructing actually this dataset)</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Best and thanks,</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New"">Gema</span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-family:"Courier New""> </span></p>
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<p class="MsoNormal"><b><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Gema Fernández-Avilés Calderón<br>
</span></b><i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)">Profesora Titular de Universidad</span></i><span style="font-size:9pt;font-family:Arial,sans-serif;color:rgb(59,59,59)"></span></p>
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