<div dir="ltr"><div><div>Hello,</div><br></div><div>The number of Discriminant Axes will always be one less than the number of clusters. You have two clusters, thus you will only have one axis to separate them. This is detailed in the DAPC manual.</div><div><br></div><div>Hope that helps,</div><div>Zhian<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Jan 11, 2020 at 11:00 AM <<a href="mailto:adegenet-forum-request@lists.r-forge.r-project.org">adegenet-forum-request@lists.r-forge.r-project.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Send adegenet-forum mailing list submissions to<br>
<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a><br>
<br>
To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum" rel="noreferrer" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum</a><br>
<br>
or, via email, send a message with subject or body 'help' to<br>
<a href="mailto:adegenet-forum-request@lists.r-forge.r-project.org" target="_blank">adegenet-forum-request@lists.r-forge.r-project.org</a><br>
<br>
You can reach the person managing the list at<br>
<a href="mailto:adegenet-forum-owner@lists.r-forge.r-project.org" target="_blank">adegenet-forum-owner@lists.r-forge.r-project.org</a><br>
<br>
When replying, please edit your Subject line so it is more specific<br>
than "Re: Contents of adegenet-forum digest..."<br>
<br>
<br>
Today's Topics:<br>
<br>
1. 2 clusters with DAPC (Kimberly Ann McLaughlin)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Fri, 10 Jan 2020 16:24:01 +0000<br>
From: Kimberly Ann McLaughlin <<a href="mailto:kimberly.mclaughlin@northwestern.edu" target="_blank">kimberly.mclaughlin@northwestern.edu</a>><br>
To: "<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>"<br>
<<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>><br>
Subject: [adegenet-forum] 2 clusters with DAPC<br>
Message-ID: <<a href="mailto:1578673441366.70699@northwestern.edu" target="_blank">1578673441366.70699@northwestern.edu</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hello,<br>
<br>
<br>
I'm not getting the expected plots with 2 clusters I got from DAPC with the scatter function. The plot looks like this (see attached) and not the scatterplot I wanted. Is there any reason why I'm seeing this and is there any alternative to produce a scatterplot with 2 clusters??<br>
<br>
<br>
Thanks!<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200110/d33d340e/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200110/d33d340e/attachment-0001.html</a>><br>
-------------- next part --------------<br>
A non-text attachment was scrubbed...<br>
Name: center_2_clusters.pdf<br>
Type: application/pdf<br>
Size: 14654 bytes<br>
Desc: center_2_clusters.pdf<br>
URL: <<a href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200110/d33d340e/attachment-0001.pdf" rel="noreferrer" target="_blank">http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200110/d33d340e/attachment-0001.pdf</a>><br>
<br>
------------------------------<br>
<br>
Subject: Digest Footer<br>
<br>
_______________________________________________<br>
adegenet-forum mailing list<br>
<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a><br>
<a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum" rel="noreferrer" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum</a><br>
<br>
------------------------------<br>
<br>
End of adegenet-forum Digest, Vol 134, Issue 3<br>
**********************************************<br>
</blockquote></div>