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<body><div style="font-family:menlo, consolas, monospace;">Dear Thibuat,<br></div>
<div style="font-family:menlo, consolas, monospace;">Many thanks for your kind email.Looking forward to see you in October.</div>
<div style="font-family:menlo, consolas, monospace;"><br></div>
<div id="sig43071666"><div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Regards</span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Arsalan Emami-Khoyi</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Postdoctoral Research Fellow in Wildlife Genomics</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">University of Johannesburg_Center for Ecological Genomics and Wildlife Conservation</span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Auckland Park 2006</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">South Africa</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Email : </span><a href="mailto:Arsalane@uj.ac.za"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Arsalane@uj.ac.za</span></a><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Phone :+27 (0)11 559 3373</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Cellphone:+27 79 88 14 628</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div class="signature"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Website :</span><a href="https://sites.google.com/site/drpeterteske/postdocs"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">https://sites.google.com/site/drpeterteske/postdocs</span></a><br></div>
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<div>On Fri, Aug 25, 2017, at 01:23 PM, Thibaut Jombart wrote:<br></div>
<blockquote type="cite"><div dir="ltr"><div style="font-family:menlo, consolas, monospace;">Hi there, <br></div>
<div><br></div>
<div>yes, you can provide whatever 'dist' object you want to ade4::mantel.randtest. If you start from a symmetric matrix coming from another software, you can read it into R and convert it to dist using 'as.dist'.<br></div>
<div><br></div>
<div>Cheers<br></div>
<div>Thibaut<br></div>
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<div><div><div style="font-family:menlo, consolas, monospace;"><br></div>
<div style="font-family:menlo, consolas, monospace;">--<br></div>
<div style="font-family:menlo, consolas, monospace;">Dr Thibaut Jombart<br></div>
<div style="font-family:menlo, consolas, monospace;">Lecturer, Department of Infectious Disease Epidemiology, Imperial College London<br></div>
<div style="font-family:menlo, consolas, monospace;">Head of RECON: <a href="http://repidemicsconsortium.org">repidemicsconsortium.org</a><br></div>
<div style="font-family:menlo, consolas, monospace;">WHO Consultant - outbreak analysis<br></div>
<div style="font-family:menlo, consolas, monospace;"><a href="http://sites.google.com/site/thibautjombart/">sites.google.com/site/thibautjombart/</a><br></div>
<div style="font-family:menlo, consolas, monospace;">Twitter: @TeebzR<br></div>
<div style="font-family:menlo, consolas, monospace;">+44(0)20 7594 3658<br></div>
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<div defang_data-gmailquote="yes"><div style="font-family:menlo, consolas, monospace;">On 24 August 2017 at 20:22, Arsalan Emami-Khoyi <span dir="ltr"><<a href="mailto:arsalan@pobox.com">arsalan@pobox.com</a>></span> wrote:<br></div>
<blockquote defang_data-gmailquote="yes" style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204, 204, 204);padding-left:1ex;"><div style="font-family:menlo, consolas, monospace;"><u></u><br></div>
<div><div style="font-family:menlo, consolas, monospace;">Dear Thibut and Adegenet team,<br></div>
<div style="font-family:menlo, consolas, monospace;">I would like to thank you for your contributions to the scientific community.<br></div>
<div style="font-family:menlo, consolas, monospace;">I am estimating IBD for the same species using three different data sets : mtDNA,microsatellie, and SNPs.<br></div>
<div style="font-family:menlo, consolas, monospace;">For being consistent across the data sets we need to use appropriate distance matrices.<br></div>
<div style="font-family:menlo, consolas, monospace;">I am wondering if there is any way to use our in-house distant matrices instead of provided distance measures?<br></div>
<div style="font-family:menlo, consolas, monospace;">I will deeply appreciate your suggestions regarding the optimal distant method for each kind of data sets.<br></div>
<div style="font-family:menlo, consolas, monospace;">Many thanks in advance and see you in October!<br></div>
<div style="font-family:menlo, consolas, monospace;"><br></div>
<div style="font-family:menlo, consolas, monospace;"><br></div>
<div style="font-family:menlo, consolas, monospace;"><br></div>
<div><div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Regards</span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Arsalan Emami-Khoyi</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Postdoctoral Research Fellow in Wildlife Genomics</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">University of Johannesburg_Center for Ecological Genomics and Wildlife Conservation</span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Auckland Park 2006</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">South Africa</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Email : </span><a href="mailto:Arsalane@uj.ac.za"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Arsalane@uj.ac.za</span></a><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Phone :<a href="tel:+27%2011%20559%203373">+27 (0)11 559 3373</a></span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Cellphone:+27 79 88 14 628</span><span class="font" style="font-family:menlo, consolas, monospace, sans-serif"></span><br></div>
<div><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">Website :</span><a href="https://sites.google.com/site/drpeterteske/postdocs"><span class="font" style="font-family:menlo, consolas, monospace, sans-serif">https://sites.google.com/<wbr>site/drpeterteske/postdocs</span></a><br></div>
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