<!DOCTYPE html><html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8" /></head><body><div data-crea="font-wrapper" style="font-family: Tahoma; font-size: 16px; direction: ltr"><div><div>
<div data-crea="font-wrapper" style="direction: ltr;"><div style="font-family: Tahoma; font-size: 16px;"></div><font face="Tahoma">Dear all,</font><div style="font-family: Tahoma; font-size: 16px;"><span style="font-family: Helvetica, Tahoma, Arial, sans-serif;font-size: 14.6667px">I am a new member of this forum, I’m trying to use adegenet to define </span><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px">genetic clusters and genetic diversity </span></font><span style="font-family: Helvetica, Tahoma, Arial, sans-serif;font-size: 14.6667px">between two groups. </span></div><div style="font-family: Tahoma; font-size: 16px;"><span style="font-family: Helvetica, Tahoma, Arial, sans-serif;font-size: 14.6667px">As mentioned in user guide the SSR data converted to binary code like "data(microbov)". I have raw genotyping result in Genepop format as copied below:</span></div><div style="font-family: Tahoma; font-size: 16px;"><span style="font-family: Helvetica, Tahoma, Arial, sans-serif;font-size: 14.6667px"><div style="font-family: Tahoma; font-size: 16px;"><br></div><div style="font-family: Tahoma; font-size: 16px;">============================</div><div style="font-family: Tahoma; font-size: 16px;">pop</div><div style="font-family: Tahoma; font-size: 16px;">77568 , 0308 0506 0205 0404 0405 0105 0103 0405 0406 0103 0505 0506 0306</div><div style="font-family: Tahoma; font-size: 16px;">77571 , 0108 0104 0207 0607 0505 0202 0505 0101 0104 0104 0606 0404 0108</div><div style="font-family: Tahoma; font-size: 16px;">77575 , 0103 0102 0608 0104 0210 0203 0202 0103 0406 0404 0202 0406 0104</div><div style="font-family: Tahoma; font-size: 16px;">77579 , 0303 0102 0407 0406 0405 0203 0305 0107 0406 0103 0505 0405 0304</div><div style="font-family: Tahoma; font-size: 16px;">77580 , 0104 0105 0105 0406 0305 0304 0305 0203 0202 0303 0606 0405 0304</div><div>....</div><div>=====================================</div></span></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;">My question is: How I can convert the genotyping result of SSR marker to binary code in adegenet? </span></font><br></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;">Is it possible with other packages or other software in this regards?</span></font></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;"><br></span></font></div><div><span style="font-family: Helvetica, Tahoma, Arial, sans-serif; font-size: 14.6667px;">Has anyone come across this and be able to overcome it?</span><br style="font-family: Helvetica, Tahoma, Arial, sans-serif; font-size: 14.6667px;"></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;"><br></span></font></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;">Best regards, </span></font></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;">Mohammad</span></font></div><div><font face="Helvetica, Tahoma, Arial, sans-serif"><span style="font-size: 14.6667px;"><br></span></font></div><div style="font-family: Tahoma; font-size: 16px;"><br><div><div data-crea="font-wrapper" style="font-family: Tahoma;font-size: 16px;direction: ltr"><div><font size="2">==================================</font></div><div><b><font size="2">Mohammad Bagher Zandi B.M.</font></b></div><div><font color="#0000ff"><span style="font-size: small">Genetics</span><span style="font-size: small"> and </span><font size="2">Animal Breeding(PhD)</font></font></div><div><font size="2">Associate Professor</font></div><div><font size="2">Faculty of Agriculture</font></div><div><b><font size="2">Department of Animal Science</font></b></div><div><font size="2">University of Zanjan, Zanjan, Iran</font></div><div><br></div></div></div></div></div>
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