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<font face="Calibri">Hi there,<br>
<br>
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<p class="MsoNormal"><font face="Calibri"><span
style="mso-ansi-language:EN-GB" lang="EN-GB">I’ve got a
question regarding the assessment of genetic structure from
microsatellite data
using the DAPC method. My dataset contains around 30% of
repeated genotypes. I
observe different and contrasted results (BIC as a function of
the number of
clusters) when I keep or exclude repeated genotypes
(find.clusters function).
Has someone ever experienced this situation and how would you
explain it ? I
would have predicted that finding the optimal number of
clusters should not be
influenced by repeated genotypes as the DAPC is only based on
the variation between
genotypes. Is there a general recommendation whether keeping
or excluding
repeated genotypes when performing DAPC ? <br>
</span></font></p>
<p class="MsoNormal"><font face="Calibri"><span
style="mso-ansi-language:EN-GB" lang="EN-GB"><br>
Cheers,<br>
</span></font></p>
<p class="MsoNormal"><font face="Calibri">Adrien</font><br>
<span style="mso-ansi-language:EN-GB" lang="EN-GB"><o:p></o:p></span></p>
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<pre class="moz-signature" cols="72">--
Adrien RIEUX
CIRAD - Dpt BIOS - UMR PVBMT
Tel: 0262499219
<a class="moz-txt-link-freetext" href="https://adrienrieux.wordpress.com/home/">https://adrienrieux.wordpress.com/home/</a></pre>
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