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<p>Hi all, </p>
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<p>I have a genlight object and I would like to analyze the contributions of different alleles to populations structure.</p>
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<div>The example on the manual is for genind objects and a previous answer indicated that the fix-around, using as.data.frame, is only good for haploid data. <a href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum/2014-May/000840.html" class="OWAAutoLink" id="LPlnk51232" previewremoved="true" style="font-size: 12pt;">http://lists.r-forge.r-project.org/pipermail/adegenet-forum/2014-May/000840.html</a></div>
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<div>Is it yet possible to do section 3.4 (Jombart and Collins 2015) with a diploid dataset? It would be really cool if so!</div>
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<div>Thanks,</div>
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<div>Alan</div>
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<div>> pldata</div>
<div> /// GENLIGHT OBJECT /////////</div>
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<div> // 223 genotypes, 76,288 binary SNPs, size: 9 Mb</div>
<div> 0 (0 %) missing data</div>
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<div> // Basic content</div>
<div> @gen: list of 223 SNPbin</div>
<div> @ploidy: ploidy of each individual (range: 2-2)</div>
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<div> // Optional content</div>
<div> @ind.names: 223 individual labels</div>
<div> @loc.names: 76288 locus labels</div>
<div> @pop: population of each individual (group size range: 1-1)</div>
<div> @other: a list containing: sex phenotype pat mat </div>
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<div>> freq399 <- tab(genind2genpop(pldata[loc=c("41837")]),freq=TRUE)</div>
<div>Error in genind2genpop(pldata[loc = c("41837")]) : </div>
<div> x is not a valid genind object</div>
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