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</o:shapelayout></xml><![endif]--><style type="text/css">.style1 {font-family: "Times New Roman";}</style></head><body lang=EN-GB link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'>Hello,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'>I want to do a DAPC on a dataset containing 1548 SNPs starting with the find.clusters command but get wildly different numbers in each group when I repeat the command using exactly the same parameters. Does anybody have an explanation for this?<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'>Thank you<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'>Markus<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0053FA'><o:p> </o:p></span></p><pre style='word-break:break-all'><span class=gcg2ujhdabb><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>> </span></span><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>grp <- find.clusters(rul, max.n.clust=10)<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'>Choose the number PCs to retain (>=1): <o:p></o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>400<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'>Choose the number of clusters (>=2: <o:p></o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>3<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdabb><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>> </span></span><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>table(pop(rul), grp$grp)<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> <o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> 1 2 3<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> native 2 131 52<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> non-native 67 3 1<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> hispanica 5 0 0<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> odd 12 113 41<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'><o:p> </o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdabb><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>> </span></span><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>grp <- find.clusters(rul, max.n.clust=10)<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'>Choose the number PCs to retain (>=1): <o:p></o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>400<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'>Choose the number of clusters (>=2: <o:p></o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>3<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdabb><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>> </span></span><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>table(pop(rul), grp$grp)<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> <o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> 1 2 3<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> native 1 1 183<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> non-native 15 51 5<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> hispanica 0 5 0<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> odd 0 12 154<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'><o:p> </o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdabb><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>> </span></span><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>grp <- find.clusters(rul, max.n.clust=10)<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'>Choose the number PCs to retain (>=1): <o:p></o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>400<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'>Choose the number of clusters (>=2: <o:p></o:p></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>3<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span class=gcg2ujhdabb><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>> </span></span><span class=gcg2ujhdeab><span style='font-family:"Lucida Console";color:blue;background:#E1E2E5'>table(pop(rul), grp$grp)<o:p></o:p></span></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> <o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> 1 2 3<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> native 49 134 2<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> non-native 1 3 67<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> hispanica 0 0 5<o:p></o:p></span></pre><pre style='word-break:break-all'><span style='font-family:"Lucida Console";color:black;background:#E1E2E5'> odd 41 113 12<o:p></o:p></span></pre><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1631F6;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>Dr Markus Ruhsam<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>Molecular Plant Ecologist<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>Royal Botanic Garden Edinburgh<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>20A Inverleith Row<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>Edinburgh <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>EH3 5LR<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>United Kingdom<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'> <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>Tel: +44 (0) 131 248 2859<br>Fax: +44 (0) 131 248 2901 <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'><a href="http://www.rbge.org.uk/science/genetics-and-conservation/markus-ruhsam-homepage"><span style='color:#1616F6;text-decoration:none'>http://www.rbge.org.uk/science/genetics-and-conservation/markus-ruhsam-homepage</span></a> <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#1616F6;mso-fareast-language:EN-GB'>The mission of the Royal Botanic Garden Edinburgh is to “<b>To explore, conserve and explain the world of plants for a better future</b>”<o:p></o:p></span></p><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:#0070C0;mso-fareast-language:EN-GB'><o:p> </o:p></span></b></p><p class=MsoNormal><span style='color:#0053FA;mso-fareast-language:EN-GB'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:#1F497D;mso-fareast-language:EN-GB'><img border=0 width=325 height=105 id="Picture_x0020_2" src="cid:image001.png@01D26BEF.A833AB80" alt="cid:image002.png@01D09F78.9DFBA130"></span><span style='color:#0053FA;mso-fareast-language:EN-GB'><o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p></div>
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<p style="font-family: Verdana; font-size:8pt; color:#666666;">The <a href="http://www.rbge.org.uk/" target="_blank">Royal Botanic Garden Edinburgh</a> is a charity registered in Scotland (No SC007983)</p><p></p>
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