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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hi Arsalam,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">It looks like you may have your labels (clab) set to 1 (or some other positive value) so that it is covering up your points. Perhaps
your symbols (cex) are also set to either zero or a very small value. You might also have cstar set to zero so you wont see any of the lines joining points to the centroid for that group.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I suggest tying higher values for your cex and cstar. You could also set clab=0 to remove the labels to see if theyre obscuring the
points. I prefer to use a legend than direct labels.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Cheers,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Olly<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span lang="EN-AU" style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#0099CC">Dr Oliver Berry</span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D"><br>
Senior Research Scientist</span><b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#BED600"> |
</span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">CSIRO Ocean and Atmosphere<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">Team Leader</span><b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#BED600">
| </span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">Coastal Ecosystems and Modelling<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">Adjunct Senior Lecturer, School of Animal Biology, The University of Western Australia<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">Phone: +61 8 9333 6584</span><b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#BED600">
| </span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">0400 747 197</span><b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#BED600"> |</span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">Fax:
+61 8 9333 6499<br>
</span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#0099CC"><a href="mailto:oliver.berry@csiro.au"><span style="color:blue">oliver.berry@csiro.au</span></a></span><b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#BED600">|</span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D">
</span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#0099CC">www.csiro.au/en/Research/OandA</span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D"><br>
Address: </span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#999999">Centre for Environment and Life Sciences, Cnr Underwood Ave. & Brockway Rd, Floreat, WA, 6014</span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D"><br>
Postal: </span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#999999">Private Mail Bag 5, Wembley, WA, 6913</span><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#A6A6A6">PLEASE NOTE</span></b><span lang="EN-AU" style="font-size:9.0pt;font-family:"Arial",sans-serif;color:#A6A6A6"><br>
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<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> adegenet-forum-bounces@lists.r-forge.r-project.org [mailto:adegenet-forum-bounces@lists.r-forge.r-project.org]
<b>On Behalf Of </b>Arsalan Emami-Khoyi<br>
<b>Sent:</b> Monday, 28 November 2016 5:03 AM<br>
<b>To:</b> adegenet-forum@lists.r-forge.r-project.org; thibautjombart@gmail.com<br>
<b>Subject:</b> [adegenet-forum] scatter plot<o:p></o:p></span></p>
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<p class="MsoNormal">Dear Dr. jombart and other users,<o:p></o:p></p>
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<p class="MsoNormal">I am not a very experienced user of adegenet ! I just follow tutorials and at final stage when I used scatter(dapc1) what I get is only few squares by numbers( screenshot attached) showing my clusters and individuals are not showed !
I am wondering if any body can help me to solve the issue ? apologize for basic question.<o:p></o:p></p>
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<p class="MsoNormal">Many thanks in advance<o:p></o:p></p>
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