<html><body><div style="font-family: trebuchet ms,sans-serif; font-size: 12pt; color: #000000"><div>If I understand correctly, you can use the assign function for ?pop, e.g.</div><div><br data-mce-bogus="1"></div><div style="padding-left: 30px;"><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;">data(H3N2)</span><br><br><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;">nInd(H3N2)</span><br><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;"># [1] 1903</span><br><br><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;">pop(H3N2)</span><br><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;"># NULL</span><br></div><div style="padding-left: 30px;"><br data-mce-bogus="1"></div><div style="padding-left: 30px;"><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;"># will make each individual in its own population</span><br><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;">pop(H3N2) <- 1:1903</span></div><div style="padding-left: 30px;"><br data-mce-bogus="1"></div><div style="padding-left: 30px;"><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;"># see</span></div><div style="padding-left: 30px;"><span style="font-family: "courier new", courier, monaco, monospace, sans-serif;" data-mce-style="font-family: 'courier new', courier, monaco, monospace, sans-serif;">pop(H3N2)</span></div><div><br></div><div>Cheers,</div><div>Roman</div><div data-marker="__SIG_PRE__">----<br>In god we trust, all others bring data.</div><br><hr id="zwchr" data-marker="__DIVIDER__"><div data-marker="__HEADERS__"><b>From: </b>"Felipe Hernández" <fhernandeu@uc.cl><br><b>To: </b>adegenet-forum@lists.r-forge.r-project.org<br><b>Sent: </b>Saturday, October 15, 2016 7:42:46 PM<br><b>Subject: </b>[adegenet-forum] Genind object inquiry<br></div><br><div data-marker="__QUOTED_TEXT__"><div dir="ltr">Good afternoon,<br><div>Perhaps this's a pretty basic question, but I have been struggling in order to set the populations which my individuals belong to in my microsat dataset. In other words, I don't understand how to set the slot 'pop' when I create a genind object from a csv file that contains all my genetic data. For example, should I include in my matrix a column containing the population codes which my individuals belong to (beside all my locus columns)? Or, should I just include my loci info? I realised if I include the column with the population codes in my genind object, this is also considered as a locus, and surely, this's no correct. I assume that solving this issue, I may appropriately transform my genind object to a genpop object, which is my next goal to continue with my analyses. Thank you in advance for your valuable input, thanks!</div><br><div>Regards,</div><div>Felipe <br clear="all"><br>-- <br><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr">Felipe Hernández<div>Médico Veterinario (DVM), MSc.<div>PhD. Candidate<div>Interdisciplinary Ecology Program</div><div>School of Natural Resources and Environment</div><div>Wildlife Ecology and Conservation Department</div><div>University of Florida</div></div></div></div></div></div></div></div></div>
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