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<p>Hi everyone,</p>
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<p>I'm wondering if anyone has gotten stuck on the find.clusters function?</p>
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<p>I did a DAPC on this exact dataset in some months back and now I want that I redo it to check a different K value and change the colours, but it keeps getting stuck on find.clusters. </p>
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<p>Any idea what may be causing this? If I remember correctly, this step doesn't take long, definitely not more than a day.</p>
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<div>I've tried on a new mac and also on a PC using<span style="font-family: Calibri, Arial, Helvetica, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;"> the </span><span style="font-family: Calibri, Arial, Helvetica, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;">parallel
= FALSE argument. </span></div>
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<div>Any help is appreciated.</div>
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<div>>pldata = read.PLINK("batch_1_recode.raw") <span style="font-family: Calibri, Arial, Helvetica, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", NotoColorEmoji, "Segoe UI Symbol", "Android Emoji", EmojiSymbols; font-size: 16px;"></span></div>
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<div>>grp = find.clusters(pldata, max.n.clust = 15) ##GETS STUCK ON THIS</div>
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<div><span style="font-size: 12pt;">/// GENLIGHT OBJECT /////////</span><br>
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<div> // 229 genotypes, 62,236 binary SNPs, size: 15.3 Mb</div>
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<div><span style="font-size: 12pt;"> // Basic content</span><br>
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<div> @gen: list of 229 SNPbin</div>
<div> @ploidy: ploidy of each individual (range: 2-2)</div>
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<div> // Optional content</div>
<div> @ind.names: 229 individual labels</div>
<div> @loc.names: 62236 locus labels</div>
<div> @pop: population of each individual (group size range: 8-20)</div>
<div> @other: a list containing: sex phenotype pat mat </div>
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