<html><body><div style="font-family: trebuchet ms,sans-serif; font-size: 12pt; color: #000000"><div>Hi Stephen,</div><div><br data-mce-bogus="1"></div><div>along with the answer provided in this thread, there's also an answer on <a href="https://github.com/thibautjombart/adegenet/issues/144" data-mce-href="https://github.com/thibautjombart/adegenet/issues/144">GitHub</a>. What adegenet tutorial are you referring to?</div><div><br></div><div>Cheers,</div><div>Roman</div><div data-marker="__SIG_PRE__">----<br>In god we trust, all others bring data.</div><br><hr id="zwchr" data-marker="__DIVIDER__"><div data-marker="__HEADERS__"><b>From: </b>"Stephen Attwood" <swahuaxi@yahoo.com><br><b>To: </b>adegenet-forum@lists.r-forge.r-project.org<br><b>Sent: </b>Monday, June 13, 2016 3:02:24 PM<br><b>Subject: </b>[adegenet-forum] scaleGen error using method="binom"<br></div><br><div data-marker="__QUOTED_TEXT__"><div style="color: #000; background-color: #fff; font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;" data-mce-style="color: #000; background-color: #fff; font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"><div id="yui_3_16_0_ym19_1_1465813649484_27077">Dear All</div><div id="yui_3_16_0_ym19_1_1465813649484_27210"><br></div><div dir="ltr" id="yui_3_16_0_ym19_1_1465813649484_27214">I am having a problem using scaleGen, so I tried going back to the adegenet tutorial and I get the same error:</div><div id="yui_3_16_0_ym19_1_1465813649484_27512" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1465813649484_27259" dir="ltr">data(microbov)</div><div id="yui_3_16_0_ym19_1_1465813649484_27300" dir="ltr">obj <- genind2genpop(microbov)<br id="yui_3_16_0_ym19_1_1465813649484_27303">X1 <- scaleGen(obj)</div><div id="yui_3_16_0_ym19_1_1465813649484_27319" dir="ltr">X2 <- scaleGen(obj,met="bin")</div><div id="yui_3_16_0_ym19_1_1465813649484_27347" dir="ltr">Error in .local(x, ...) : unused argument (met = "bin")</div><div id="yui_3_16_0_ym19_1_1465813649484_27382" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1465813649484_27390" dir="ltr">I get the same error with my own data (I also tried method = "binary", method = "bin", etc)<br></div><div id="yui_3_16_0_ym19_1_1465813649484_27079"><br></div><div dir="ltr" id="yui_3_16_0_ym19_1_1465813649484_27475">X1 is as expected, but X2 is obviously not assigned</div><div id="yui_3_16_0_ym19_1_1465813649484_27557" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1465813649484_27609" dir="ltr">I have the following packages loaded:</div><div id="yui_3_16_0_ym19_1_1465813649484_27566" dir="ltr">library(ade4)<br id="yui_3_16_0_ym19_1_1465813649484_27564">library(adegenet)<br id="yui_3_16_0_ym19_1_1465813649484_27565">library(spdep)</div><div id="yui_3_16_0_ym19_1_1465813649484_27567" dir="ltr">library ("OpenStreetMap")</div><div id="yui_3_16_0_ym19_1_1465813649484_27684" dir="ltr">library(ape)<br></div><div id="yui_3_16_0_ym19_1_1465813649484_27086"><br></div><div dir="ltr" id="yui_3_16_0_ym19_1_1465813649484_27124">Using adegenet 2.0.2 and R version 3.2.5 (2016-04-14); platform x86_64-pc-linux-gnu</div><div id="yui_3_16_0_ym19_1_1465813649484_27730" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1465813649484_27737" dir="ltr">If someone could suggest what I might have overlooked, that would be a great help - I am probably missing a package somewhere. I thought it would be a common problem, but I haven't found it on Google - perhaps the solution is so simple. At the moment it is eluding me.<br></div><div id="yui_3_16_0_ym19_1_1465813649484_27780" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1465813649484_27772" dir="ltr">Thank you.</div><div id="yui_3_16_0_ym19_1_1465813649484_27844" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1465813649484_27843" dir="ltr">Stephen<br></div></div><br>_______________________________________________<br>adegenet-forum mailing list<br>adegenet-forum@lists.r-forge.r-project.org<br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum<br></div></div></body></html>