<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Guys,<div class=""><br class=""></div><div class="">I am new to R but have been using adegenet without too many issues. I have a genind object with population strata and would like to be able to calculate the proportion of shared alleles among populations rather that individuals. There are a number of recent papers comparing Fst with population Dps in the context of historical vs. contemporary gene flow but these have all used use software designed for sats whereas I am using ~3500 SNPs. I understand that the propShared function requires a genind object but am unsure how to proceed. I think I can probably just use population averages for each pairwise comparison of my individual data, however I was hoping for a more elegant way to just calculate at the population level.</div><div class=""><br class=""></div><div class="">Any help appreciated</div><div class=""><br class=""></div><div class="">Chris Brauer</div><div class=""><span style="orphans: 2; widows: 2;" class="">PhD Candidate</span><div class="" style="orphans: 2; widows: 2;">Molecular Ecology Lab.<br class="">School of Biological Sciences<br class="">Flinders University<br class="">Australia<br class=""><a href="http://molecularecology.flinders.edu.au" class="">http://molecularecology.flinders.edu.au</a></div></div></body></html>