<html><body><div style="font-family: trebuchet ms,sans-serif; font-size: 12pt; color: #000000"><div>Sure, try</div><div><br></div><div><p style="margin: 0px;" data-mce-style="margin: 0px;">> library(adegenet)<br>> data(nancycats)<br>> <br>> my.names <- indNames(nancycats)[1:5]<br>> my.names<br>[1] "N215" "N216" "N217" "N218" "N219"<br>> <br>> nancycats[my.names, ]<br>/// GENIND OBJECT /////////</p><p style="margin: 0px;" data-mce-style="margin: 0px;">// 5 individuals; 9 loci; 108 alleles; size: 24 Kb</p><p style="margin: 0px;" data-mce-style="margin: 0px;">// Basic content<br> @tab: 5 x 108 matrix of allele counts<br> @loc.n.all: number of alleles per locus (range: 8-18)<br> @loc.fac: locus factor for the 108 columns of @tab<br> @all.names: list of allele names for each locus<br> @ploidy: ploidy of each individual (range: 2-2)<br> @type: codom<br> @call: .local(x = x, i = i, j = j, drop = drop)</p><p style="margin: 0px;" data-mce-style="margin: 0px;">// Optional content<br> @pop: population of each individual (group size range: 5-5)<br> @other: a list containing: xy</p><p style="margin: 0px;" data-mce-style="margin: 0px;"><br></p><p style="margin: 0px;" data-mce-style="margin: 0px;">> indNames(nancycats[my.names, ])<br>[1] "N215" "N216" "N217" "N218" "N219"</p><p style="margin: 0px;" data-mce-style="margin: 0px;"><br></p><p style="margin: 0px;" data-mce-style="margin: 0px;">Cheers,</p><p style="margin: 0px;" data-mce-style="margin: 0px;">Roman</p></div><div><br></div><div><span name="x"></span>----<br>In god we trust, all others bring data.<span name="x"></span><br></div><div><br></div><hr id="zwchr"><div style="color:#000;font-weight:normal;font-style:normal;text-decoration:none;font-family:Helvetica,Arial,sans-serif;font-size:12pt;" data-mce-style="color: #000; font-weight: normal; font-style: normal; text-decoration: none; font-family: Helvetica,Arial,sans-serif; font-size: 12pt;"><b>From: </b>"Ronald Moura" <ronaldmoura1989@gmail.com><br><b>To: </b>adegenet-forum@lists.r-forge.r-project.org<br><b>Sent: </b>Friday, December 4, 2015 6:15:25 PM<br><b>Subject: </b>[adegenet-forum] isolate individuals from a Genind object<br><div><br></div><div dir="ltr">Hi,<div><br></div><div>Is there any way to extract a subset of individuals from a Genind object? To isolate markers the command is:</div><div><span style="font-size:12px;line-height:12.48px" data-mce-style="font-size: 12px; line-height: 12.48px;"><br></span></div><div><span style="font-size:12px;line-height:12.48px" data-mce-style="font-size: 12px; line-height: 12.48px;">obj </span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px;"><-</span><span style="font-size:12px;line-height:12.48px" data-mce-style="font-size: 12px; line-height: 12.48px;"> nancycats</span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,153,0)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #009900;">[</span><span style="font-size:12px;line-height:12.48px" data-mce-style="font-size: 12px; line-height: 12.48px;">loc=</span><a href="http://inside-r.org/r-doc/base/c" style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,119,223);text-decoration:none" target="_blank" data-mce-href="http://inside-r.org/r-doc/base/c" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #0077df; text-decoration: none;"><span style="margin:0px;padding:0px;color:rgb(0,51,153);font-weight:bold" data-mce-style="margin: 0px; padding: 0px; color: #003399; font-weight: bold;">c</span></a><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,153,0)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #009900;">(</span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,0,255)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #0000ff;">"fca23"</span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(51,153,51)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #339933;">,</span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,0,255)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #0000ff;">"fca90"</span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,153,0)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #009900;">)</span><span style="font-size:12px;line-height:12.48px;margin:0px;padding:0px;color:rgb(0,153,0)" data-mce-style="font-size: 12px; line-height: 12.48px; margin: 0px; padding: 0px; color: #009900;">]</span></div><div><br>Is there a similar command for individuals?</div><div><br></div><div>thanks for helping.</div><div><br></div><div>-- <br><div class="gmail_signature"><div dir="ltr"><span style="display:block" data-mce-style="display: block;"><span>Yours sincerely,</span></span><br>Ronald Moura<br><div><br></div>Department of Genetics, Federal University of Pernambuco<br></div></div></div></div><br>_______________________________________________<br>adegenet-forum mailing list<br>adegenet-forum@lists.r-forge.r-project.org<br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum</div><div><br></div></div></body></html>