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<body class='hmmessage'><div dir='ltr'>Dear all,<br>I would like to conduct a spatial PCA with 24000 SNP (after pruning). If I understand spca is not possible with a genlight object, so I use PLINK to recode my data in a STRUCTURE format, and then I work on a genind object in R....but the analysis ends....because of the size of the genind object I imagine.<br>Is there a solution (split the data? but how?)?<br>I am loosing all my hair over that problem (perhaps pathetically simple....) and I would be really grateful if someone could help me to escape from my ignorance....<br>Kind regards<br>Anne<br><br><br><br> Anne Blondeau Da Silva<br> Unité de Génétique Moléculaire Animale<br> UMR 1061 INRA-Université de Limoges<br> Faculté des Sciences et Techniques<br> 123 Avenue Albert Thomas<br> 87060 LIMOGES Cedex<br> Tél. 05 55 45 76 75<br> Fax. 05 55 45 76 53<br><div><div style="font-family:trebuchet ms,sans-serif;font-size:12pt;color:#000000;"><div style="color:#000;font-weight:normal;font-style:normal;text-decoration:none;font-family:Helvetica,Arial,sans-serif;font-size:12pt;">_______________________________________________<br>adegenet-forum mailing list<br>adegenet-forum@lists.r-forge.r-project.org<br>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum</div><div><br></div></div><br>_______________________________________________
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