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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Dear Ella,
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this is hard to tell without the input file. However, you may want to use genind objects for that kind of data, as the dataset is fairly small. genlight only is recommended when basically no other options are available, i.e. 100,000 or millions of SNPs<br>
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Cheers<br>
Thibaut<br>
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<div style="direction: ltr;" id="divRpF285950"><font face="Tahoma" color="#000000" size="2"><b>From:</b> adegenet-forum-bounces@lists.r-forge.r-project.org [adegenet-forum-bounces@lists.r-forge.r-project.org] on behalf of Ella Bowles [ebowles@ucalgary.ca]<br>
<b>Sent:</b> 22 September 2015 20:28<br>
<b>To:</b> adegenet-forum@lists.r-forge.r-project.org<br>
<b>Subject:</b> [adegenet-forum] question about warning message<br>
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<div class="gmail_default" style="font-size:large; color:rgb(0,0,255)">Hello,</div>
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<div class="gmail_default" style="font-size:large; color:rgb(0,0,255)">After I converted my data into a genlight object, I got the warning message</div>
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<div class="gmail_default">Warning message:</div>
<div class="gmail_default">In matrix(txt, ncol = 4, byrow = TRUE) :</div>
<div class="gmail_default"> data length [16397] is not a sub-multiple or multiple of the number of rows [4100]</div>
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<div class="gmail_default">How do I know if this is a problem?</div>
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<div class="gmail_default">I have just over 4000 SNPs spread over 186 individuals. My data import line is:</div>
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<div class="gmail_default">data=read.PLINK(file='plink.raw', map.file='batch_1.plink.map', quiet = FALSE, chunkSize = 186, parallel = FALSE)</div>
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<div class="gmail_default">With thanks,</div>
<div class="gmail_default">Ella</div>
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-- <br>
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<div>Ella Bowles<br>
PhD Candidate </div>
<div>Biological Sciences</div>
<div>University of Calgary<br>
<br>
e-mail: <a href="mailto:ebowles@ucalgary.ca" target="_blank">ebowles@ucalgary.ca</a>,
<a href="mailto:bowlese@gmail.com" target="_blank">bowlese@gmail.com</a></div>
<div>website: <a href="http://ellabowlesphd.wordpress.com/" rel="nofollow me" style="color:rgb(59,89,152); font-family:'lucida grande',tahoma,verdana,arial,sans-serif; font-size:11.2px; line-height:17px" target="_blank">http://<span style="display:inline-block"></span>ellabowlesphd.wordpre<span style="display:inline-block"></span>ss.com/</a></div>
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