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<div><font size="2">Hi there, <br>
<br>
yes, this was a documented bug, fixed in the devel version. Check:<br>
<a href="https://github.com/thibautjombart/adegenet" target="_blank">https://github.com/thibautjombart/adegenet</a><br>
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Cheers<br>
Thibaut<br>
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<div style="direction: ltr;" id="divRpF765427"><font face="Tahoma" size="2" color="#000000"><b>From:</b> adegenet-forum-bounces@lists.r-forge.r-project.org [adegenet-forum-bounces@lists.r-forge.r-project.org] on behalf of Chris Hollenbeck [chollenbeck07@tamu.edu]<br>
<b>Sent:</b> 21 August 2015 14:23<br>
<b>To:</b> adegenet-forum@lists.r-forge.r-project.org<br>
<b>Subject:</b> [adegenet-forum] read.genepop (adegenet 2.0.0)<br>
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<div dir="ltr">Hi,
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<div>I've seen a similar question on another thread, but I wasn't sure if this exact issue has been addressed. It seems that the 'read.genepop' function in adegenet 2.0 no longer has the option to specify the missing data character string, with the result that
missing data gets coded as an allele. Is this an intentional feature of the new package? If so, I'm not sure what is the best way to modify the genind object to change the missing data 'alleles' to NAs.</div>
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<div>Thank you in advance for your help.</div>
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<div>- Chris</div>
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