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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;"><font size="2">Hi there,
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<br>
yes, this 'package' is merely a set of functions I had contributed during a workshop - I am not maintaining it currently.
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<br>
I think Stephane Dray (Cced), author of ade4, is also working on an adespatial which would integrate the MSPA.
<br>
<br>
Stephane, is this functional yet? <br>
<br>
Best<br>
Thibaut<br>
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<div style="direction: ltr;" id="divRpF392200"><font face="Tahoma" color="#000000" size="2"><b>From:</b> Genevieve Diedericks [diedericks.genevieve@gmail.com]<br>
<b>Sent:</b> 03 August 2015 13:46<br>
<b>To:</b> Jombart, Thibaut<br>
<b>Cc:</b> adegenet-forum@lists.r-forge.r-project.org<br>
<b>Subject:</b> Re: FW: MSPA<br>
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<div dir="ltr">Hi Jombart,
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<div>I'm struggling to install sedarJombart and cannot seem to find the zip file either (I've installed an older R version in the hopes of getting it installed). Any advice?</div>
<div>Thank you.</div>
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<div>Regards</div>
<div>Genevieve<br>
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<div class="gmail_quote">On Thu, Jul 30, 2015 at 1:25 PM, Diedericks, G, Me <<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>>
<span dir="ltr"><<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>></span> wrote:<br>
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<font face="Tahoma" size="2"><b>From:</b> Jombart, Thibaut<br>
<b>Sent:</b> 30 July 2015 01:24:53 PM (UTC+02:00) Harare, Pretoria<br>
<b>To:</b> Diedericks, G, Me <<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>>;
<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a><br>
<b>Subject:</b> RE: MSPA<br>
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The graph may be too large for your computer to handle? Rendering of large graphs is typically slow on R's graphic devices. How many nodes do you have?<br>
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Best<br>
Thibaut<br>
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ps: please keep the forum Cced<br>
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<div style="direction:ltr"><font face="Tahoma" color="#000000" size="2"><b>From:</b> Diedericks, G, Me <<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>> [<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>]<br>
<b>Sent:</b> 30 July 2015 12:07<br>
<b>To:</b> Jombart, Thibaut<br>
<b>Subject:</b> Re: MSPA<br>
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<p>Hi,</p>
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</p>
<p>Thanks for the speedy reply! I did as you suggested, but my R session keeps on bombing out or hanging (I am using Rstudio).</p>
<p>Any suggestions on how to fix this?</p>
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<p>Thank you.</p>
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<p>Kind regards,</p>
<p>Genevieve</p>
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<div dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> Jombart, Thibaut <<a href="mailto:t.jombart@imperial.ac.uk" target="_blank">t.jombart@imperial.ac.uk</a>><br>
<b>Sent:</b> 30 July 2015 12:37 PM
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<div><br>
<b>To:</b> Diedericks, G, Me <<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>>;
<a href="mailto:adegenet-forum@lists.R-forge.R-project.org" target="_blank">adegenet-forum@lists.R-forge.R-project.org</a><br>
<b>Subject:</b> RE: MSPA</div>
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<div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt"><font size="2">Hi there,
<br>
<br>
if I remember well, chooseCN has an option to edit the graph manually / interactively. The interface is a bit clunky but it should do the trick.
<br>
<br>
Just set the argument edit.nb=TRUE when creating your graph. <br>
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Cheers<br>
Thibaut<br>
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<div style="direction:ltr"><font face="Tahoma" color="#000000" size="2"><b>From:</b>
<a href="mailto:adegenet-forum-bounces@lists.r-forge.r-project.org" target="_blank">
adegenet-forum-bounces@lists.r-forge.r-project.org</a> [<a href="mailto:adegenet-forum-bounces@lists.r-forge.r-project.org" target="_blank">adegenet-forum-bounces@lists.r-forge.r-project.org</a>] on behalf of Diedericks, G, Me <<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>>
[<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>]<br>
<b>Sent:</b> 30 July 2015 10:24<br>
<b>To:</b> <a href="mailto:adegenet-forum@lists.R-forge.R-project.org" target="_blank">
adegenet-forum@lists.R-forge.R-project.org</a><br>
<b>Cc:</b> Diedericks, G, Me <<a href="mailto:gend@sun.ac.za" target="_blank">gend@sun.ac.za</a>><br>
<b>Subject:</b> [adegenet-forum] MSPA<br>
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<p>Good day,</p>
<p><br>
</p>
<p>I'm trying to run a MSPA for a freshwater fish species, sampled at 10 sites along a river. I have chosen the Delaunay Triangulation, but need to edit the connections as some of the sites are below a dam wall, so the fish cannot move back up the river. Could
you please assist me with this? </p>
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<p>Kind regards,</p>
<p>Genevieve</p>
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<div dir="ltr"><font color="#ff0080" size="3"><em><font face="Century Schoolbook"><strong>Genevieve
<font color="#ff0080">Diedericks</font></strong></font></em></font></div>
<div dir="ltr"><font face="Century Schoolbook" color="#ff0080" size="2"><em></em></font></div>
<div dir="ltr"><font face="Century Schoolbook" color="#ff0080" size="2"><em>PhD candidate ~ Zoology</em></font></div>
<div dir="ltr"><em><font face="Century Schoolbook" color="#ff0080" size="2">Centre for Invasion Biology (C.I.B)</font></em></div>
<div dir="ltr"><em><font face="Century Schoolbook" color="#ff0080" size="2">Department of Botany & Zoology</font></em></div>
<div dir="ltr"><em><font face="Century Schoolbook" color="#ff0080" size="2">Stellenbosch University</font></em></div>
<div dir="ltr"><em><font face="Century Schoolbook" color="#ff0080" size="2">South Africa</font></em></div>
<div dir="ltr"><font face="Century Schoolbook" color="#ff0080" size="2"><em><a href="tel:%2B27%20%280%29%2021%20808%204135" value="+27218084135" target="_blank">+27 (0) 21 808 4135</a></em></font></div>
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