<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Zhian and all,<div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>Thanks for your help - for the record, this suggestion worked. I thought it was unique to my computer but didn’t know where to take such an issue. I will refer technical issues such as this to the github issue system in the future.</div><div class=""><br class=""></div><div class="">-Eric</div><div class=""><br class=""></div><div class=""><br class=""><div class=""><div><blockquote type="cite" class=""><div class="">On Apr 20, 2015, at 9:15 AM, Zhian Kamvar <<a href="mailto:zkamvar@gmail.com" class="">zkamvar@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">I have experience this error before and I was lucky enough to have a segfault at address 0x18, because that's the result that produces the most helpful answers.<span class="Apple-converted-space"> </span></span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">It is not an issue with adegenet, but rather something corrupted in your library. The recommendation is to reinstall all of your packages as suggested here:<span class="Apple-converted-space"> </span></span><a href="http://stackoverflow.com/a/25833832/2752888" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">http://stackoverflow.com/a/25833832/2752888</a><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Since this is not an adegenet issue and I have had experience with this, you may respond to me (not to the list) if you have any more inquiries.</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Cheers,</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Zhian</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><blockquote type="cite" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">On Apr 20, 2015, at 02:22 ,<span class="Apple-converted-space"> </span><a href="mailto:adegenet-forum-request@lists.r-forge.r-project.org" class="">adegenet-forum-request@lists.r-forge.r-project.org</a><span class="Apple-converted-space"> </span>wrote:<br class=""><br class="">Dear Thibault or whom it may concern,<br class=""><br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Adegenet has recently started causing R to crash with a segmentation fault upon loading the library. I have tried re-installing the package from binary and from source, as well as re-installing R - all to no avail. Below is a traceback of the error from the R-console. Below that, I have posted an error message that is given when I try to install the package from source. I don?t encounter this error with any other R package that I have used recently. I am running R on a 2014 Macbook with OS X 10.10.3.<br class=""><br class="">Many thanks for your help and let me know if I can provide additional information.<br class=""><br class="">Sincerely,<br class=""><br class="">Eric Crandall<br class="">Assistant Researcher<br class="">University of Hawaii<br class=""><br class=""><br class=""><blockquote type="cite" class="">R version 3.1.3 (2015-03-09) -- "Smooth Sidewalk"<br class="">Copyright (C) 2015 The R Foundation for Statistical Computing<br class="">Platform: x86_64-apple-darwin13.4.0 (64-bit)<br class=""><br class="">R is free software and comes with ABSOLUTELY NO WARRANTY.<br class="">You are welcome to redistribute it under certain conditions.<br class="">Type 'license()' or 'licence()' for distribution details.<br class=""><br class="">Natural language support but running in an English locale<br class=""><br class="">R is a collaborative project with many contributors.<br class="">Type 'contributors()' for more information and<br class="">'citation()' on how to cite R or R packages in publications.<br class=""><br class="">Type 'demo()' for some demos, 'help()' for on-line help, or<br class="">'help.start()' for an HTML browser interface to help.<br class="">Type 'q()' to quit R.<br class=""><br class="">[R.app GUI 1.65 (6913) x86_64-apple-darwin13.4.0]<br class=""><br class="">[Workspace restored from /Users/eric/.RData]<br class="">[History restored from /Users/eric/.Rapp.history]<br class=""><br class=""><blockquote type="cite" class="">library(adegenet)<br class=""></blockquote>Loading required package: ade4<br class=""><br class="">*** caught segfault ***<br class="">address 0x0, cause 'memory not mapped'<br class=""><br class="">Traceback:<br class="">1: doTryCatch(return(expr), name, parentenv, handler)<br class="">2: tryCatchOne(expr, names, parentenv, handlers[[1L]])<br class="">3: tryCatchList(expr, classes, parentenv, handlers)<br class="">4: tryCatch(fun(libname, pkgname), error = identity)<br class="">5: runHook(".onLoad", env, package.lib, package)<br class="">6: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])<br class="">7: asNamespace(ns)<br class="">8: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)<br class="">9: loadNamespace(package, c(which.lib.loc, lib.loc))<br class="">10: doTryCatch(return(expr), name, parentenv, handler)<br class="">11: tryCatchOne(expr, names, parentenv, handlers[[1L]])<br class="">12: tryCatchList(expr, classes, parentenv, handlers)<br class="">13: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})<br class="">14: try({ ns <- loadNamespace(package, c(which.lib.loc, lib.loc)) env <- attachNamespace(ns, pos = pos, deps)})<br class="">15: library(adegenet)</blockquote></blockquote></div></blockquote></div><br class=""></div></div></body></html>