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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi there,

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it has been discussed on this forum recently. Check "process.other" in ?genind2genpop: it will allow you to define the xy coords of your populations as the mean of the individual coordinates.

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Cheers<br>

Thibaut<br>

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<div style="direction: ltr;" id="divRpF739186"><font face="Tahoma" size="2" color="#000000"><b>From:</b> adegenet-forum-bounces@lists.r-forge.r-project.org [adegenet-forum-bounces@lists.r-forge.r-project.org] on behalf of Virgilio Massimiliano [massimiliano.virgilio@africamuseum.be]<br>

<b>Sent:</b> 06 January 2015 15:15<br>

<b>To:</b> adegenet-forum@lists.r-forge.r-project.org<br>

<b>Subject:</b> [adegenet-forum] individual geographic distances vs population geographic distances<br>

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<div>Hi and happy new year everybody!</div>

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<div style="font-family:Helvetica; font-size:12px">I’m trying to perform a Mantel’s test on populations rather than individuals:</div>

<div style="font-family:Helvetica; font-size:12px">- I converted my genind data to a genepop object (genind2genpop)</div>

<div style="font-family:Helvetica; font-size:12px">- I could calculate genetic distances among populations (dist.genpop)</div>

<div style="font-family:Helvetica; font-size:12px">BUT</div>

<div style="font-family:Helvetica; font-size:12px">I cannot calculate geographic distances among populations (as I only have individual coordinates in the $other$xy slot of my genuine/genepop object)</div>

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<div style="font-family:Helvetica; font-size:12px">any suggestion?</div>

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<div style="font-family:Helvetica; font-size:12px">many thanks in advance</div>

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<div style="font-family:Helvetica; font-size:12px">Massi</div>

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