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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Spencer,
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you don't need to convert genind to data.frames - just subset individuals in the genind objects like you would in a matrix. Then, you can pool datasets with potentially different alleles using 'repool'.<br>
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Cheers<br>
Thibaut<br>
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<div style="direction: ltr;" id="divRpF974537"><font color="#000000" face="Tahoma" size="2"><b>From:</b> adegenet-forum-bounces@lists.r-forge.r-project.org [adegenet-forum-bounces@lists.r-forge.r-project.org] on behalf of Spencer Bruce [goatsrunfaster@gmail.com]<br>
<b>Sent:</b> 27 October 2014 13:57<br>
<b>To:</b> adegenet-forum@lists.r-forge.r-project.org<br>
<b>Subject:</b> [adegenet-forum] Hybridize Function / df2genind error message<br>
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<div dir="ltr">Hello All,
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<div>After hybridizing two populations, I converted the genind file to at dataframe to randomly extract individuals. I then attempt to convert this data frame back into a genind file, but get the error message below:</div>
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<div>> F1_G1 <- df2genind(randomF1)</div>
<div>Error in df2genind(randomF1) : </div>
<div> 2 alleles cannot be coded by a total of 19 characters</div>
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<div>Im assuming this is because the "pop" column, instead of being coded by a number contains the text generated by the hybridize function "honnedaga-tdhybrids"</div>
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<div>I tried to resolve this by using the following code, but ran into a second error message:</div>
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<div>> randomF1$pop[randomF1$pop == "honnedaga-tdhybrids"] <- 1</div>
<div>Warning message:</div>
<div>In `[<-.factor`(`*tmp*`, randomF1$pop == "honnedaga-tdhybrids", :</div>
<div> invalid factor level, NA generated</div>
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<div>any idea how I might be able to fix this? Thanks in advance!!!</div>
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<div>-Spencer</div>
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-- <br>
Spencer A Bruce
<div>200 Washington St. </div>
<div>Troy, NY 12180<br>
518 225 0787</div>
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