<html dir="ltr">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<style id="owaParaStyle" type="text/css">P {margin-top:0;margin-bottom:0;}</style>
</head>
<body ocsi="0" fpstyle="1" style="word-wrap:break-word; color:rgb(0,0,0); font-size:14px; font-family:Calibri,sans-serif">
<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;"><br>
<div><font size="2">Hi there, <br>
<br>
it looks like a bug. I'll investigate and get back to you.<br>
<br>
Cheers<br>
Thibaut<br>
<br>
</font></div>
<div style="font-family: Times New Roman; color: #000000; font-size: 16px">
<hr tabindex="-1">
<div style="direction: ltr;" id="divRpF941757"><font color="#000000" face="Tahoma" size="2"><b>From:</b> adegenet-forum-bounces@lists.r-forge.r-project.org [adegenet-forum-bounces@lists.r-forge.r-project.org] on behalf of Jackie Lighten [Jackie.Lighten@Dal.Ca]<br>
<b>Sent:</b> 22 September 2014 12:59<br>
<b>To:</b> adegenet-forum@lists.r-forge.r-project.org<br>
<b>Subject:</b> [adegenet-forum] Trouble converting to genid object<br>
</font><br>
</div>
<div></div>
<div>
<div>Hi,</div>
<div><br>
</div>
<div>I am having trouble converting a presence/absence genotype data frame to a genid object</div>
<div><br>
</div>
<div>Please see attached for test data file.</div>
<div><br>
</div>
<div>Using </div>
<div><br>
</div>
<div>obj2 <- genind(test, ploidy=1, type="PA")</div>
<div><br>
</div>
<div>I get the error:</div>
<div><br>
</div>
<div>
<div>Error in `colnames<-`(`*tmp*`, value = c("L1", "L2")) : </div>
<div> length of 'dimnames' [2] not equal to array extent</div>
</div>
<div><br>
</div>
<div><br>
</div>
<div>Using</div>
<div><br>
</div>
<div>obj2 <- df2genind(test, ploidy=1, type="PA")</div>
<div><br>
</div>
<div>I get the error:</div>
<div><br>
</div>
<div>
<div>Error in `colnames<-`(`*tmp*`, value = "L1") : </div>
<div> length of 'dimnames' [2] not equal to array extent</div>
<div>In addition: Warning messages:</div>
<div>1: In eval(expr, envir, enclos) : NAs introduced by coercion</div>
<div>2: In df2genind(test, ploidy = 1, type = "PA") :</div>
<div> entirely non-type marker(s) deleted</div>
</div>
<div><br>
</div>
<div><br>
</div>
<div>Any help would be much appreciated</div>
<div><br>
</div>
<div>Thanks,</div>
<div><br>
</div>
<div>Jack</div>
</div>
</div>
</div>
</body>
</html>