<div dir="ltr">Hi Francesco, <br><div><br></div><div>Glad to see you are already testing out the new version of adegenet! </div><div><br></div><div>I recognise the second message (<span style="font-family:'courier new',monospace">Error in if (!ONEDIM) { : argument is of length zero). </span><font face="arial, helvetica, sans-serif">It appears twice in my R console upon start-up of the adegenetServer on Rstudio. It is also matched very briefly by the appearance of the truncated message (Error: argument is of length zero) in the adegenetServer browser. This occurs because the adegenetServer, upon start-up, attempts to immediately and simultaneously load the data and plot the DAPC scatterplot. This causes the plot function to return an error message in the moment before it is able to find the data. I will attempt to silence this error message in the next version of the adegenetServer. For now, unless you think the adegenetServer is otherwise misbehaving, I would say it is safe to simply ignore this error message. <br>
<br>As for the first error message you mentioned (</font><span style="font-family:'courier new',monospace">Error in substitute(value)[[2]] : subscript out of bounds)</span><span style="font-family:arial,helvetica,sans-serif">, could you tell me when and where this is occurring, and also what processes it seems to be interrupting? </span></div>
<div><span style="font-family:arial,helvetica,sans-serif"><br></span></div><div><span style="font-family:arial,helvetica,sans-serif">Thank you for the feedback. <br><br>Best, <br>Caitlin. </span></div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Thu, Mar 20, 2014 at 11:26 AM, Francesco Montinaro <span dir="ltr"><<a href="mailto:francesco.montinaro@gmail.com" target="_blank">francesco.montinaro@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:courier new,monospace;font-size:small">Hi Thibaut,<br></div>
<div class="gmail_default" style="font-family:courier new,monospace;font-size:small">Thank you very much for this big update!<br>
<br></div><div class="gmail_default" style="font-family:courier new,monospace;font-size:small">When I type adegenetServer() on Rstudio (on Linuxmint)<br></div><div class="gmail_default" style="font-family:courier new,monospace;font-size:small">
I get this error.<br><br>Listening on <a href="http://127.0.0.1:7727" target="_blank">http://127.0.0.1:7727</a><br>Error in substitute(value)[[2]] : subscript out of bounds<br>Error in if (!ONEDIM) { : argument is of length zero<br>
<br><br>
</div><div class="gmail_default" style="font-family:courier new,monospace;font-size:small">Best,<br><br></div><div class="gmail_default" style="font-family:courier new,monospace;font-size:small">Francesco<br></div></div>
<div class="gmail_extra">
<br clear="all"><div><div dir="ltr">Francesco Montinaro</div></div>
<br><br><div class="gmail_quote">On 20 March 2014 11:00, <span dir="ltr"><<a href="mailto:adegenet-forum-request@lists.r-forge.r-project.org" target="_blank">adegenet-forum-request@lists.r-forge.r-project.org</a>></span> wrote:<br>
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Message: 1<br>
Date: Wed, 19 Mar 2014 17:02:12 +0000<br>
From: "Jombart, Thibaut" <<a href="mailto:t.jombart@imperial.ac.uk" target="_blank">t.jombart@imperial.ac.uk</a>><br>
To: "<a href="mailto:adegenet-forum@lists.r-forge.r-project.org" target="_blank">adegenet-forum@lists.r-forge.r-project.org</a>"<br>
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Subject: [adegenet-forum] new release(s) of adegenet<br>
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Dear all<br>
<br>
as some of you might have noticed, we have just released a new version of adegenet. Well, actually two, but 1.4-0 had a bug we had to correct quickly, so new version is 1.4-1.<br>
<br>
Big changes for this new release. The tutorials are no longer distributed as vignettes, but are accessible online from the adegenet website, or using the new command "adegenetTutorial". We have revamped the tutorials, which are now using knitr rather than Sweave (meaning: prettier, and easier to copy/paste command from the pdf into R).<br>
<br>
The other big news is that Caitlin and I have been working on a web server for DAPC, which is now part of the package. Type "adegenetServer()", and this will open up a web interface for DAPC. This includes some of the most recent work Caitlin has done on DAPC, like the feature selection procedure or the cross validation.<br>
<br>
As always, feedback and contributions welcome.<br>
<br>
Happy data analysis!<br>
<br>
Best<br>
<br>
Thibaut<br>
<br>
--<br>
######################################<br>
Dr Thibaut JOMBART<br>
MRC Centre for Outbreak Analysis and Modelling<br>
Department of Infectious Disease Epidemiology<br>
Imperial College - School of Public Health<br>
St Mary?s Campus<br>
Norfolk Place<br>
London W2 1PG<br>
United Kingdom<br>
Tel. : 0044 (0)20 7594 3658<br>
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