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</o:shapelayout></xml><![endif]--></head><body lang=EN-GB link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>Hi,<o:p></o:p></p><p class=MsoNormal>I have two questions.<o:p></o:p></p><p class=MsoNormal>Firstly, for a normal PCA (dudi.pca), is it possible to see the contribution of alleles/loci to the first PC?<o:p></o:p></p><p class=MsoNormal>I have seen something similar in sPCA called the loading plot and it looks nice.<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Secondly, in sPCA, what is the difference between the actual scores (myspca$li) and lagged scores (myspca$ls)?<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal style='margin-bottom:12.0pt'><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Kind regards</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'> <o:p></o:p></span></p><table class=MsoNormalTable border=0 cellspacing=0 cellpadding=0 width=550 style='width:412.5pt'><tr><td width=300 valign=top style='width:225.0pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal style='margin-bottom:12.0pt'><b><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Roy Mathew Francis</span></b><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td><td width=250 valign=top style='width:187.5pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Dept. of Integrated Pest Management</span></b><b><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'><br></span></b><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Aarhus University<br>Forsøgsvej 1<br>DK-4200 Slagelse</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td></tr></table><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman","serif";display:none'><o:p> </o:p></span></p><table class=MsoNormalTable border=0 cellspacing=0 cellpadding=0 width=550 style='width:412.5pt'><tr><td width=300 valign=bottom style='width:225.0pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Tel.: +45 <br>Email: </span><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:#003366'>RoyFrancis.Mathew@agrsci.dk</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td><td width=250 valign=bottom style='width:187.5pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'><br>Tel.: +45 8999 1900<br>Web: <a href="www.agrsci.au.dk" target="_new"><span style='color:#003366;text-decoration:none'>www.agrsci.au.dk</span></a></span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td></tr></table><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><img border=0 width=550 height=97 id="_x0000_i1025" src="cid:image001.jpg@01CC6BCB.EDAF3F00" alt=Logo></span><o:p></o:p></p></div></body></html>