<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi all,<div><br></div><div>The fix described for adegenet in R 2.13.0 doesn't work, pointing to an incompatibility with this version of R and Bioconductor. Specifically:</div><div><br></div><div><div>> source("<a href="http://bioconductor.org/biocLite.R">http://bioconductor.org/biocLite.R</a>")</div><div>BioC_mirror = <a href="http://bioconductor.org">http://bioconductor.org</a></div><div>Change using chooseBioCmirror().</div><div><br></div><div><br></div><div><b>Fine so far...</b></div><div><br></div><div>> biocLite("graph")</div><div>Using R version 2.13.0, biocinstall version 2.8.4.</div><div>Installing Bioconductor version 2.8 packages:</div><div>[1] "graph"</div><div>Please wait...</div><div><br></div><div>Error in list(...)[["type"]] : subscript out of bounds</div><div><br></div><div><br></div><div><b>This happens for every package installed this way (including running biocLite() alone). Now we're back to the same old problem:</b></div><div><br></div><div>> install.packages("adegenet", dep=TRUE)</div><div>Installing package(s) into ‘/Users/XXX/Library/R/2.13/library’</div><div>(as ‘lib’ is unspecified)</div><div>Warning: dependencies ‘hierfstat’, ‘graph’ are not available</div><div>trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.13/adegenet_1.2-8.tgz'</div><div>Content type 'application/x-gzip' length 3046842 bytes (2.9 Mb)</div><div>opened URL</div><div>==================================================</div><div>downloaded 2.9 Mb</div></div><div><br></div><div>Any thoughts on getting the dependencies installed, minus waiting a couple weeks for the new release(s)?</div><div><br></div><div>Thanks in advance!</div></body></html>