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</o:shapelayout></xml><![endif]--></head><body lang=DA link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>Hi,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>I work with diploid microsatellite data. The PCA on this data works fine.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>The different populations can be given different colours.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>I was wondering if the different populations could be given different pch values. I tried to work this out, but doesn’t work.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>It would also be nice if some populations could be hidden for better clarity. <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>I have sort of succeeded at this by giving colour value 0 for the populations that I want hidden, but its not the best idea.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>I have tried to use plot3d from rgl package for PCA and it gives out 3d result, but I cannot color code different populations or pch differentiate pops.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>Finally I was wondering if a tutorial was made on DAPC analysis and find.clusters/assign.plot etc.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'>I am currently using structure, but wish to move to DAPC on R.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Verdana","sans-serif"'><o:p> </o:p></span></p><p class=MsoNormal style='margin-bottom:12.0pt'><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Kind regards</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'> <o:p></o:p></span></p><table class=MsoNormalTable border=0 cellspacing=0 cellpadding=0 width=550 style='width:412.5pt'><tr><td width=300 valign=top style='width:225.0pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal style='margin-bottom:12.0pt'><b><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Roy Mathew Francis</span></b><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td><td width=250 valign=top style='width:187.5pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal><b><span lang=EN-US style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Dept. of Integrated Pest Management</span></b><b><span lang=EN-US style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'><br></span></b><span lang=EN-US style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Faculty of Agricultural Sciences<br>Aarhus University<br>Forsøgsvej 1<br>DK-4200 Slagelse</span><span lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td></tr></table><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman","serif";display:none'><o:p> </o:p></span></p><table class=MsoNormalTable border=0 cellspacing=0 cellpadding=0 width=550 style='width:412.5pt'><tr><td width=300 valign=bottom style='width:225.0pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal><span lang=EN-US style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'>Tel.: +45 <br>Email: </span><span lang=EN-US style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:#003366'>RoyFrancis.Mathew@agrsci.dk</span><span lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td><td width=250 valign=bottom style='width:187.5pt;padding:0cm 0cm 0cm 0cm'><p class=MsoNormal><span lang=EN-US style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'><br>Tel.: +45 8999 1900<br>Web: </span><span style='font-size:9.0pt;font-family:"Verdana","sans-serif";color:black'><a href="www.agrsci.au.dk" target="_new"><span lang=EN-US style='color:#003366;text-decoration:none'>www.agrsci.au.dk</span></a></span><span lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p></td></tr></table><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><img border=0 width=550 height=97 id="_x0000_i1025" src="cid:image001.jpg@01CB8B06.4C57ACB0" alt=Logo></span><o:p></o:p></p></div></body></html>