Hi Thibaut,<br>many thanks for your answer....you guess it right, you lost the homemade lasagna that I did in the night between Friday and Tuesday while I was hopefully checking the email :P... sorry for the delay of my replay, the command lines are these: <br>
<br>STRs<-read.table("STRs.csv", header=T)<br>popSTRs<-read.table("popSTRs.csv", header=F)<br>STRs<-as.genind(STRs,pop=pop_STRs, prevcall=NULL, ploidy=2, type="codom")<br>STRspop<-genind2genpop(STRs, pop=popSTRs)<br>
STRs_spca<-spca(STRspop, xy=coorstr, cn=NULL, scale=T, scale.method="sigma", scannf=F, nfposi=1, nfnega=1, type=2)<br><br>I send you the files too, maybe the error is there...many thanks in advance for your help!!! Opensource blessed forever!!!<br>
Best regards and cheers <br>Valeria<br><br><div class="gmail_quote">2010/3/5 Jombart, Thibaut <span dir="ltr"><<a href="mailto:t.jombart@imperial.ac.uk">t.jombart@imperial.ac.uk</a>></span><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Valeria,<br>
<br>
sorry I'm just reading your email right now. I guess I lost the opportunity to have genuine Lasagne. Damn.<br>
<br>
Unfortunately I can't see what's wrong just by reading the error. Can you give us the command lines you used so that we can check if it is not some basic syntax error (starting from when you read your data in R)?. If that is not enough, I would need your genpop object (you can send it off list) so that I can check what's going on.<br>
<br>
Cheers,<br>
<br>
Thibaut.<br>
<br>
________________________________________<br>
From: <a href="mailto:adegenet-forum-bounces@lists.r-forge.r-project.org">adegenet-forum-bounces@lists.r-forge.r-project.org</a> [<a href="mailto:adegenet-forum-bounces@lists.r-forge.r-project.org">adegenet-forum-bounces@lists.r-forge.r-project.org</a>] On Behalf Of valeria montano [<a href="mailto:mirainoshojo@gmail.com">mirainoshojo@gmail.com</a>]<br>
Sent: 04 March 2010 23:08<br>
To: <a href="mailto:adegenet-forum@lists.r-forge.r-project.org">adegenet-forum@lists.r-forge.r-project.org</a><br>
Subject: [adegenet-forum] so...<br>
<div><div></div><div class="h5"><br>
...as I promised I am contacting "Mr.adegenet.forum" for "future problems" (that means that I am currently having problems...). I swear that I was about reading the whole archive to see if somebody had my same problem before so to not bother more than necessary....but I need an answer until tomorrow 10 am (high hopes). I am performing spca on a dataset of 14 STRs, no missing data, the genpop object doesn't show any defect (apparently)...but when I try to perform spca it says: Error in `rownames<-`(`*tmp*`, value = c("1", "2", "3", "4", "5", "6", : attempt to set rownames on object with no dimensions...I am sure that I DID some obtuse mistake!!! but I don't know what it is!!!! I will send an homemade Italian (100%) lasagna to anybody will be so nice to help me before 10 a.m. of today...merci beaucoup<br>
Valeria<br>
<br>
</div></div></blockquote></div><br>