<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Thibaut,<div><br></div><div>I am Michaël, I have a problem with Adegenet when I want to import my dataset from a data.frame. The problematic point is to import annex information within the Genind object. I am not very use to that kind of object. Specifically my data are imported in R as a data.frame ( read.table() ), and I would like to add information within the Genind object, such as the population, the geographic coordinates, and other factors, such as the year.</div><div><br></div><div>Here is an example of the kind of script I am using:</div><div><br></div><div><blockquote type="cite">#My data<br></blockquote><blockquote type="cite">ampelo_gp<- cbind(AQmalus3, AQmalus4, AQmalus8, AQmalus10, AQmalus11)<br></blockquote><blockquote type="cite">head(ampelo_gp)<br></blockquote><blockquote type="cite">ampelo_ID <- cbind(ID, DNAsamples,Populations,X,Y, Country, Year)<br></blockquote><blockquote type="cite">head(ampelo_ID)<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">#the Genind object<br></blockquote><blockquote type="cite">amp_ade <- df2genind(X=ampelo_gp, ind.names=ID, pop=Populations, ploidy=1)<br></blockquote><blockquote type="cite">amp_ade@pop=Populations #it works, but is this the best way to proceed?<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">#here I am trying to add annex information in the class @other est définie comme NULL.<br></blockquote><blockquote type="cite">amp_ade@other@xy=cbind(X,Y)<br></blockquote><blockquote type="cite">amp_ade@other@coutry=Country</blockquote><div>Here this doesn't work, R return that "amp_ade@other" is defined as NULL.</div></div><div>How can I import these information within the @other?</div><div><br></div><div>Thank you in advance for your answer,</div><div>All the best,</div><div>Michaël</div><div><span class="Apple-style-span" style="font-family: Arial; white-space: pre-wrap; ">--</span></div><div><div apple-content-edited="true"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-family: Arial; font-size: 14px; white-space: pre-wrap; ">Michael C. Fontaine </span></div><div><br></div><div><span class="Apple-style-span" style="white-space: pre-wrap; "><font class="Apple-style-span" face="Arial" size="4"><span class="Apple-style-span" style="font-size: 14px; "><span class="Apple-style-span" style="font-family: Helvetica; white-space: normal; "><font class="Apple-style-span" color="#000000">PostDoc</font></span></span></font></span></div><span class="Apple-style-span" style="font-size: 14px; "><font class="Apple-style-span" color="#000000">UMR CNRS/Universite Paris Sud/AgroParisTech 8079<br>Universite Paris-Sud, Batiment 360<br>F-91405 Orsay cedex<br>FRANCE<br>Phone +33169155662<br>Fax +33169154697</font></span><div><span class="Apple-style-span" style="white-space: pre-wrap; "><font class="Apple-style-span" face="Arial" size="4"><span class="Apple-style-span" style="font-size: 14px; "><font class="Apple-style-span" color="#000000">E-Mail: <a href="mailto:michael.fontaine@u-psud.fr">michael.fontaine@u-psud.fr</a> </font></span></font></span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 14px; white-space: pre-wrap; ">Personal webpage: <a href="http://users.skynet.be/fb683753/michaelcfontaine/Home.html">http://users.skynet.be/fb683753/michaelcfontaine/Home.html</a></span></div></div></span></div></span></div></span></div></span></div></span></div></span></div></span> </div><br></div></body></html>