[adegenet-forum] adegenet-forum Digest, Vol 143, Issue 1

[Zhian N. Kamvar]

Hello,

You can use the package {poppr} for this purpose as it works quite well 
with adegenet. In particular, you might be interested in the "clone 
correction" feature that will remove duplicates from your analysis:

https://grunwaldlab.github.io/poppr/articles/mlg.html#clone-correction-1

Hope that helps,
Zhian

On 1/27/21 3:00 AM, adegenet-forum-request at lists.r-forge.r-project.org 
wrote:
> Send adegenet-forum mailing list submissions to
> 	adegenet-forum at lists.r-forge.r-project.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
> 	https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum
>
> or, via email, send a message with subject or body 'help' to
> 	adegenet-forum-request at lists.r-forge.r-project.org
>
> You can reach the person managing the list at
> 	adegenet-forum-owner at lists.r-forge.r-project.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of adegenet-forum digest..."
>
>
> Today's Topics:
>
>     1. Question About Adegenet (Walker, John-Lee Sky - (johnleewalker))
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 26 Jan 2021 16:17:45 +0000
> From: "Walker, John-Lee Sky - (johnleewalker)"
> 	<johnleewalker at arizona.edu>
> To: "adegenet-forum at lists.r-forge.r-project.org"
> 	<adegenet-forum at lists.r-forge.r-project.org>
> Subject: [adegenet-forum] Question About Adegenet
> Message-ID:
> 	<BY5PR19MB339834455B198AF60DC041CBA9BC9 at BY5PR19MB3398.namprd19.prod.outlook.com>
> 	
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hello,
>
> I am using microsatellite data to distinguish individual bats. I have created a genind object with my data. One thing I would like to be able to do is determine when I have matching genotypes, in my case it would be if I have "recaptured" and individual. I am unsure if the package includes a function that makes this possible, or not. I have read the PDF pretty thoroughly and explored the forum archives. I would appreciate any feedback greatly.
>
> Kind Regards,
> John-Lee
>
> John-Lee Sky Walker
> Graduate Research Assistant
> School of Natural Resources and the Environment
> The University of Arizona
> Tucson, AZ 85721
> Phone: 805-570-7864
>
> [cid:502636e1-eaef-431d-87aa-fddd45839d45]
>
>
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20210126/ef503347/attachment-0001.html>
> -------------- next part --------------
> A non-text attachment was scrubbed...
> Name: Outlook-ogmrddvg.png
> Type: image/png
> Size: 5595 bytes
> Desc: Outlook-ogmrddvg.png
> URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20210126/ef503347/attachment-0001.png>
>
> ------------------------------
>
> Subject: Digest Footer
>
> _______________________________________________
> adegenet-forum mailing list
> adegenet-forum at lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum
>
> ------------------------------
>
> End of adegenet-forum Digest, Vol 143, Issue 1
> **********************************************