[adegenet-forum] How we can convert the genotyping result of SSR marker to binary cod

mbzandi at znu.ac.ir mbzandi at znu.ac.ir
Mon May 22 22:33:54 CEST 2017


Dear all,I am a new member of this forum, I’m trying to use adegenet to define genetic clusters and genetic diversity between two groups. As mentioned in user guide the SSR data converted to binary code like "data(microbov)". I have raw genotyping result in Genepop format as copied below:
============================pop77568 , 0308 0506 0205 0404 0405 0105 0103 0405 0406 0103 0505 0506 030677571 , 0108 0104 0207 0607 0505 0202 0505 0101 0104 0104 0606 0404 010877575 , 0103 0102 0608 0104 0210 0203 0202 0103 0406 0404 0202 0406 010477579 , 0303 0102 0407 0406 0405 0203 0305 0107 0406 0103 0505 0405 030477580 , 0104 0105 0105 0406 0305 0304 0305 0203 0202 0303 0606 0405 0304
....
=====================================
My question is: How I can convert the genotyping result of  SSR marker to binary code in adegenet? 

Is it possible with other packages or other software in this regards?
Has anyone come across this and be able to overcome it?
Best regards, 
Mohammad
==================================
Mohammad Bagher Zandi B.M.
Genetics and Animal Breeding(PhD)
Associate Professor
Faculty of Agriculture
Department of Animal Science
University of Zanjan, Zanjan, Iran
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